[Bioperl-l] EMBL format field
Wen Huang
whuang.ustc at gmail.com
Mon Jun 9 03:27:42 UTC 2008
Hi all,
I have a EMBL file that I want to extract one of the line
###file###
ID BAA19060; SV 1; linear; mRNA; STD; MAM; 2115 BP.
XX
PA AB000170.1
XX
DE Sus scrofa (pig) endopeptidase 24.16 type M1
XX
OS Sus scrofa (pig)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia;
OC Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus.
OX NCBI_TaxID=9823;
.........
I want the accession number in the line that starts with PA, AB000170
in this example.
Can anybody kindly help, tell me which module and method I should use?
I tried various things like $seq_obj -> primary_id, display_id,
get_secondary_id, etc.. they did not work...
Thanks a lot!
Wen
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