[Bioperl-l] Core dump in t/protgraph on FreeBSD

[Fernan Aguero]

+----[ Peter van Heusden <pvh at egenetics.com> (25.Nov.2004 12:06):
|
| And now with a fresh compile of Clone-0.15 this problem goes away. All 
| bioperl tests are now ok on this version of FreeBSD (4-STABLE).
| 
| Peter
| Peter van Heusden wrote:
|
+----]

Things do not look so pretty here. Some tests are failing,
attached is the output (make.out). 

My Perl is 5.6.1, maybe some tests are failing because of this? 

Other than that, perhaps it is because of some outdated
dependency? I have not seen any warning from bioperl about
missing dependencies. Just in case I have also attached is
the list of my installed perl modules, with their versions,
in case someone with a sharp vision can spot something.

Peter, can you send me the output of 'ls /var/db/pkg | grep p5'?

Thanks,

Fernan

-- 
Fernán Agüero | Instituto de Investigaciones Biotecnológicas
email         | fernan at { iib.unsam.edu.ar , mail.retina.ar }
wwww          | http://genoma.unsam.edu.ar/~fernan
phone, fax    | +54 11 { 4580-7255 ext 310, 4752-9639 }
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p5-AcePerl-1.83
p5-Apache-Test-1.10
p5-AppConfig-1.56
p5-Archive-Tar-1.09
p5-Attribute-Handlers-0.78
p5-Authen-SASL-2.08
p5-Cache-Cache-1.02
p5-Carp-Assert-0.18
p5-Class-AutoClass-0.09
p5-Class-Container-0.10
p5-Class-Data-Inheritable-0.02_1
p5-Class-Fields-0.201
p5-Clone-0.15
p5-Compress-Zlib-1.33
p5-Crypt-SSLeay-0.51
p5-DBD-Pg-1.32
p5-DBD-mysql-2.9003
p5-DBI-1.42_1
p5-Data-Dumper-2.121
p5-Date-Manip-5.42a
p5-Devel-StackTrace-1.11
p5-Devel-ptkdb-1.1086
p5-Digest-1.08
p5-Digest-HMAC-1.01
p5-Digest-MD5-2.33
p5-Digest-Nilsimsa-0.06
p5-Digest-SHA1-2.10
p5-Error-0.15
p5-Exception-Class-1.19
p5-ExtUtils-CBuilder-0.03
p5-ExtUtils-ParseXS-2.07
p5-File-Spec-0.86
p5-File-Temp-0.12_1
p5-Finance-Quote-1.08
p5-Finance-QuoteHist-0.31
p5-GD-2.16
p5-GD-SVG-0.25
p5-Graph-0.20105
p5-GraphViz-1.8
p5-HTML-0.6
p5-HTML-Mason-1.26_1
p5-HTML-Parser-3.36
p5-HTML-TableExtract-1.08
p5-HTML-Tagset-3.03
p5-Heap-0.70
p5-IO-Socket-SSL-0.96
p5-IO-String-1.05
p5-IO-Tty-1.02
p5-IO-Zlib-1.01
p5-IO-stringy-2.108
p5-IPC-Run-0.78
p5-IPC-ShareLite-0.09
p5-Inline-0.44
p5-Inline-Java-0.33
p5-MIME-Base64-3.01
p5-MIME-Lite-3.01
p5-MIME-Tools-5.411a_3,1
p5-Mail-SpamAssassin-3.0.1_1
p5-Mail-Tools-1.62
p5-Math-Bezier-0.01
p5-Math-Derivative-0.01
p5-Math-Random-0.67
p5-Math-Spline-0.01
p5-Module-Build-0.25.01
p5-Net-1.18,1
p5-Net-DNS-0.47
p5-Net-Daemon-0.38
p5-Net-SSLeay-1.25
p5-Params-Validate-0.74
p5-Parse-RecDescent-1.94
p5-Parse-Yapp-1.05
p5-PlRPC-0.2017
p5-PodParser-1.28
p5-SOAP-Lite-0.60a
p5-SVG-2.28
p5-SVG-Graph-0.01
p5-Scalar-List-Utils-1.14,1
p5-Statistics-Descriptive-2.6
p5-Storable-2.12
p5-Template-Toolkit-2.13
p5-Test-Harness-2.42
p5-Test-Simple-0.47_1
p5-Text-Balanced-1.95
p5-Text-Iconv-1.3
p5-Text-Shellwords-1.02
p5-Tie-IxHash-1.21
p5-Time-HiRes-1.59,1
p5-TimeDate-1.16,1
p5-Tk-800.023
p5-Tree-DAG_Node-1.04
p5-URI-1.31
p5-VCG-0.5
p5-XML-DOM-1.43
p5-XML-Filter-BufferText-1.01
p5-XML-Handler-YAWriter-0.23
p5-XML-NamespaceSupport-1.08
p5-XML-Node-0.11
p5-XML-Parser-2.34_1
p5-XML-RegExp-0.03
p5-XML-SAX-0.12
p5-XML-SAX-Writer-0.44
p5-XML-Simple-2.12
p5-XML-Twig-3.15
p5-XML-Writer-0.500
p5-XML-XPath-1.13
p5-XML-XQL-0.68
p5-YAML-0.35
p5-base-2.03
p5-bioperl-1.4
p5-libapreq-1.3
p5-libwww-5.79
p5-libxml-0.07
p5-podlators-1.27
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