[Bioperl-l] Core dump in t/protgraph on FreeBSD

[Peter van Heusden]

And now with a fresh compile of Clone-0.15 this problem goes away. All 
bioperl tests are now ok on this version of FreeBSD (4-STABLE).

Peter
Peter van Heusden wrote:

> Aaron J. Mackey wrote:
>
>> Please use the CVS HEAD ...
>>
> I've just reconfirmed - coredump on FreeBSD 4-STABLE with perl 5.8.5 
> on protgraph.t, bioperl from clean checkout of CVS head.
>
> Peter
>
>> -Aaron
>>
>> Fernan Aguero wrote:
>>
>>> +----[ Peter van Heusden <pvh at egenetics.com> (25.Nov.2004 07:03):
>>> |
>>> | Hi
>>>
>>> Hi Peter!
>>>
>>> I've been trying to get some spare time to test the 1.5
>>> release candidates on FreeBSD, but have not yet managed to
>>> do it.
>>>
>>> Are you using 1.5 from CVS or from the rc1 tarball?
>>>
>>> Fernan
>>>
>>> | I'm seeing a core dump in the t/protgraph test with perl 5.8.5 on 
>>> | FreeBSD 4.10-STABLE. The core dump is coming from | 
>>> Bio::Graph:::ProteinGraph, line 414, where Clone's clone method is 
>>> being | called. Since clone() is implemented in XS, I imagine some 
>>> kind of | pointer trouble is causing this problem.
>>> | | Is anyone else seeing this problem? Its the only thing that 
>>> stops me | from having a 'green light' on my bioperl tests page. :(
>>> | | Peter
>>> |
>>> +----]
>>>
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>
>
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