[Bioperl-l] Core dump in t/protgraph on FreeBSD

[Peter van Heusden]

Aaron J. Mackey wrote:

> Please use the CVS HEAD ...
>
I've just reconfirmed - coredump on FreeBSD 4-STABLE with perl 5.8.5 on 
protgraph.t, bioperl from clean checkout of CVS head.

Peter

> -Aaron
>
> Fernan Aguero wrote:
>
>> +----[ Peter van Heusden <pvh at egenetics.com> (25.Nov.2004 07:03):
>> |
>> | Hi
>>
>> Hi Peter!
>>
>> I've been trying to get some spare time to test the 1.5
>> release candidates on FreeBSD, but have not yet managed to
>> do it.
>>
>> Are you using 1.5 from CVS or from the rc1 tarball?
>>
>> Fernan
>>
>> | I'm seeing a core dump in the t/protgraph test with perl 5.8.5 on | 
>> FreeBSD 4.10-STABLE. The core dump is coming from | 
>> Bio::Graph:::ProteinGraph, line 414, where Clone's clone method is 
>> being | called. Since clone() is implemented in XS, I imagine some 
>> kind of | pointer trouble is causing this problem.
>> | | Is anyone else seeing this problem? Its the only thing that stops 
>> me | from having a 'green light' on my bioperl tests page. :(
>> | | Peter
>> |
>> +----]
>>
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