[Bioperl-l] problems parsing EBI interposscan.xml

[Hilmar Lapp]

That was my thought too when I saw it ... didn't want to be the jerk 
again so I left it where it was ... any comment from the authors?

	-hilmar

On Dec 8, 2004, at 4:35 PM, Robson Francisco de Souza {S} wrote:

> Hello,
>
>
> On Wed, Dec 08, 2004 at 04:18:34PM -0800, Hilmar Lapp wrote:
>> It looks you're trying to parse an interpro scan match file with the
>> InterPro ontology file parser (Bio::OntologyIO). Maybe what you need 
>> is
>> the interpro parser in Bio::SeqIO?
>
> By the way, wouldn't the SeqIO/interpro.pm be better placed under the
> FeatureIO hierarchy? It only collects data related to similarity and
> pattern matches on protein sequences...
> Just a thought...
> Cheers,
> Robson
>
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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