[Bioperl-l] problems parsing EBI interposscan.xml

Robson Francisco de Souza {S} rfsouza at cecm.usp.br
Wed Dec 8 19:35:30 EST 2004


On Wed, Dec 08, 2004 at 04:18:34PM -0800, Hilmar Lapp wrote:
> It looks you're trying to parse an interpro scan match file with the 
> InterPro ontology file parser (Bio::OntologyIO). Maybe what you need is 
> the interpro parser in Bio::SeqIO?

By the way, wouldn't the SeqIO/interpro.pm be better placed under the
FeatureIO hierarchy? It only collects data related to similarity and
pattern matches on protein sequences...
Just a thought...

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