[Bioperl-l] writing scf files

Hilmar Lapp hlapp@gmx.net
Sat, 25 Aug 2001 16:33:23 +0200

Chad Matsalla wrote:
> Hi,
> Does anybody have use for a module that _writes_ scf files?
> I have a module that I put into SeqIO:: although I don't think it really
> belongs there. 

Why shouldn't it? BTW I can't see it in the repository. Have you

> I started out by using Aaron's SeqIO::scf.pm as a model but I
> significantly altered from it once I got the hang of the header of the
> binary file. I think the existing SeqIO::scf.pm could be significantly
> altered so it provides sequence quality information (ie returns a
> SeqWithQuality object) when it reads an scf and so that it has the ability
> to write scf's.
> Anybody interested?
Sounds good.

Hilmar Lapp                              email: hilmarl@yahoo.com
A-1120 Vienna