[Bioperl-l] Transcript.pm

Hilmar Lapp hlapp@gmx.net
Sat, 25 Aug 2001 16:16:32 +0200

David Block wrote:
> I am just about to commit a Transcript class to bioperl-live in
> Bio/SeqFeature/Gene/Transcript.pm
> that allows you to have a structured gene class.
> The class you want to use is
> bioperl-live/Bio/SeqFeature/Gene/GeneStructure.pm
> which uses said Transcript module.
> This has methods to get,add,flush:
> Promoter
> utr
> Exon
> Intron
> poly_A_site

Just to make sure: is Transcript.pm still in line with
TranscriptI? There seem to be a couple of methods I wrote which
I'm not sure would still work after the changes. Maybe this should
be streamlined. Are you still working on that?

Hilmar Lapp                              email: hilmarl@yahoo.com
A-1120 Vienna