[Bioperl-l] Problem w/ extracting start and stop of a blast alignment
Roger Hall" <email@example.com
Thu, 23 Aug 2001 04:05:30 -0700
($qstart, $sstart) = $sbjct->start();
($qend, $send) = $sbjct->end();
Since '$objct->thing' is not usually the same as '$objct->thing()', I would
suggest you try adding the empty method parens. In fact, I see where the
property 'start' is used internally in Blast.pm, which is a different
beastie than the method 'start()'.
If that doesn't fix it for you, I suggest you try BPLite, which I know
parses them correctly. See that module for a working example.
----- Original Message -----
From: "Erik Richly" <firstname.lastname@example.org>
Sent: Thursday, August 23, 2001 3:20 AM
> I'm experiencing a problem in extracting the start and stop position of
> a blast alignment.