[Bioperl-l] FASTA format

Pedro A Reche Gallardo reche@research.dfci.harvard.edu
Fri, 17 Aug 2001 16:36:49 -0400 

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Hi all, I want to extract the sequences from a blast output an put them
in fasta format. Does anyone have an example to do this using bioperl?
Regards,


Pedro

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PEDRO a. RECHE gallardo, pHD            TL: 617 632 3824
Scientist, Mol.Immnunol.Foundation,     FX: 617 632 3351
Dana-Farber Cancer Institute,           EM: reche@research.dfci.harvard.edu
Harvard Medical School,                 EM: reche@mifoundation.org
44 Binney Street, D610C,                URL: http://www.reche.org
Boston, MA 02115
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Hi all, I want to extract the sequences from a blast output an put them
in fasta format. Does anyone have an example to do this using bioperl?
<br>Regards,
<br>&nbsp;
<p>Pedro
<pre>--&nbsp;
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PEDRO a. RECHE gallardo, pHD&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; TL: 617 632 3824&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Scientist, Mol.Immnunol.Foundation,&nbsp;&nbsp;&nbsp;&nbsp; FX: 617 632 3351
Dana-Farber Cancer Institute,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; EM: reche@research.dfci.harvard.edu
Harvard Medical School,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; EM: reche@mifoundation.org&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
44 Binney Street, D610C,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; URL: <A HREF="http://www.reche.org">http://www.reche.org</A>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Boston, MA 02115&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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