[Bioperl-l] conservative amino acid change?

[Aaron J Mackey]

On Mon, 6 Aug 2001, Heikki Lehvaslaiho wrote:

> > > Bio::Matrix::SimilarityMatrix
> > > Bio::Matrix::SimilarityMatrixIO
> > > Bio::Matrix::SimilarityMatrixIO::full
> > > Bio::Matrix::SimilarityMatrixIO::half

FYI, I also have some perl code to deal with the various

(strict)? (upper|lower) triangular matrices

that these things tend to be stored as.  It's currently my home-baked
version of Math::Matrix::Bool::Triangular (i.e. it uses
Math::Matrix::Bool, which itself is only using Bit::Vector).

Let me know if you need these array index i <-> matrix indices i,j
conversion equations.

-Aaron

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