[Bioperl-l] bp light strand method?

Neil, Keith Keith.Neil@aventis.com
Wed, 1 Aug 2001 17:53:24 +0200


Hi, Im using bplight, and want to find out the strand orientation of 
my alignment.  There doesn't seem to be a method hsp->strand ?
And if I use the start, end methods of the subject or query, I always get
start < end, which isn't what I want.

 Score = 34.2 bits (17), Expect = 0.012
 Identities = 17/17 (100%)
 Strand = Plus / Minus
 
Query: 1     gatcaaaaaaaaaaaaa 17
             |||||||||||||||||
Sbjct: 55119 gatcaaaaaaaaaaaaa 55103
 
 
 Score = 34.2 bits (17), Expect = 0.012
 Identities = 17/17 (100%)
 Strand = Plus / Plus
 
Query: 1     gatcaaaaaaaaaaaaa 17
             |||||||||||||||||
Sbjct: 15190 gatcaaaaaaaaaaaaa 15206