[Bioperl-l] bp light strand method?
Neil, Keith
Keith.Neil@aventis.com
Wed, 1 Aug 2001 17:53:24 +0200
Hi, Im using bplight, and want to find out the strand orientation of
my alignment. There doesn't seem to be a method hsp->strand ?
And if I use the start, end methods of the subject or query, I always get
start < end, which isn't what I want.
Score = 34.2 bits (17), Expect = 0.012
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1 gatcaaaaaaaaaaaaa 17
|||||||||||||||||
Sbjct: 55119 gatcaaaaaaaaaaaaa 55103
Score = 34.2 bits (17), Expect = 0.012
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 gatcaaaaaaaaaaaaa 17
|||||||||||||||||
Sbjct: 15190 gatcaaaaaaaaaaaaa 15206