[Bioperl-l] install problems?

[Jason Stajich]

yes this is doc bug, yes it has been fixed on the branch and on the main
head of src.  Paul Gordon's follow covers how to do this properly.  We are
working harder at making sure cope snippets in the documentation match
usage (this happens when we import modules from other people who might
not use same package names).

On Fri, 27 Apr 2001, george wrote:

> I am trying to use the BPlite module of bioperl w/ the script
> in the tutorial.
>
>    use Bio::Tools::BPlite;
>    $report = new BPlite(-fh=>\*STDIN);
>    $report->query;
>    while(my $sbjct = $report->nextSbjct) {
>         $sbjct->name;
>         while (my $hsp = $sbjct->nextHSP) { $hsp->score; }
>    }
>
>
> I get the message :
>
> #Can't locate object method "new" via package "BPlite" at
> ./testbplite.pl line 4.
>
> when i run the parse_blast2.pl script in the examples folder it runs correctly
> until it gives a error message of
>
> Can't find the object method "layout" via package Bio::Seq at
> parse_blast2.pl line 135, <STDIN> chunk 3.
>
> Have I installed bioperl correctly? Do I need additional modules?
> redhat 6.2, perl 5.005
>
> Any advise would be appreciated
>
> Thanks
>
> george
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center
http://www.chg.duke.edu/