[Bioperl-l] Split locations

Elia Stupka elia@ebi.ac.uk
Sun, 29 Apr 2001 20:54:01 +0100 (BST)


I have changed the sub_Location method on split locations. It used to
order locations even if the order parameter was not defined. This screwed
EMBL/Genbank dumping majorly because if an mRNA was defined as being made
of 300..400 on accession A and then 30..70 on the sequence itself (master
seq), the order was reversed. Why is the ordering necessary at all? Is it
just for the min_start and max_start methods to work?

Let me know,

Elia

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