[Bioperl-l] Source code for SW algorithm?

[Paul Gordon]

> Is the source code (in C?) of the Smith-Waterman algorithm available
> somewhere?

Not really a Perl question, but a C implementation can be found in the
FastA package (the program is called ssearch)
ftp://ftp.virginia.edu/pub/fasta/fasta33t08d4.shar.Z

________________________________________________________________________
Paul Gordon                                     Paul.Gordon@nrc.ca
Genomic Technologies				http://maggie.cbr.nrc.ca
Institute for Marine Biosciences
National Research Council Canada