[Bioperl-l] Source code for SW algorithm?

Paul Gordon gordonp@niji.imb.nrc.ca
Fri, 6 Apr 2001 19:18:19 -0300 (ADT)

> Is the source code (in C?) of the Smith-Waterman algorithm available
> somewhere?

Not really a Perl question, but a C implementation can be found in the
FastA package (the program is called ssearch)

Paul Gordon                                     Paul.Gordon@nrc.ca
Genomic Technologies				http://maggie.cbr.nrc.ca
Institute for Marine Biosciences
National Research Council Canada