[Bioperl-l] Bio::SeqIO::swiss
L.Pollak
lorenz@ist.org
Fri, 28 Jul 2000 20:41:37 +0200
Hi to everyone!
while i was implementing save functions for this protein control panel
thingy i discovered that the write abilities of Bio::SeqIO::swiss are
rather unfinished... (it can't write features for instance)
so i'll do some work on this, ok?
greetings,
Lorenz
PS: the current progress of my program may be of interest:
done:
+ read one swissprot sequence from file
+ retrieve sequence from db/flat file indexes
(genpept is already working, others need
saved settings for paths and other stuff)
+ save sequence to swissprot file (same/other)
+ show seq stats
+ edit description
+ edit/add/del comments
+ edit/add/del dblinks
+ edit/add/del references
working on:
* edit/add/del features (with subfeatures)
* improvement of swissprot output
not started:
- the whole blast / hmmer stuff
- edit sequence so that features and other things that have
start/end values remain consistent