[MOBY-dev] To Whom It May Concern Regarding The Service "RunNCBIBlastn"

[Pieter Neerincx]

On  28Feb2006, at 16:06, Sebastien Carrere wrote:

> Hello Pieter,
>
> I agree with you for making this change in the responseHeader sub.

Done :).

> However, shouldn't we rewritte completely this sub to also include  
> Error
> handling in the <serviceNotes> block ?
> Maybe this sub should have a "-exception" parameter .
>
> What do you think about this ?

Yes we should, but that requires a bit more work and debugging.  
Moving the human readable stuff to Notes inside serviceNotes was a 5  
minute fix. So at least we're compatible with the current specs again  
although the advanced error handling is not implemented yet.

Cheers,

Pi

> Cordialement,
> Sebastien
>
>
>
> Pieter Neerincx a écrit :
>> On 28-Feb-2006, at 2:05 PM, Martin Senger wrote:
>>
>>
>>>> I'm not sure who runs the service "RunNCBIBlastn", but when I  
>>>> get an
>>>> exception returned, it comes in a ServiceNotes tag, not a
>>>> serviceNotes
>>>> tag (note capitalization).
>>>>
>>>>
>>>    BTW, both are wrong, of course: it should be in
>>> <serviceNotes><Notes>...</Notes></serviceNotes>.
>>>
>>
>> Which reminds me: in Perl MOBY/Commonsubs.pm also still generates
>> <serviceNotes>...</serviceNotes>. So basically all the services that
>> use the Perl API are incompatible as well :(. Does Anyone have
>> objections if I change that to <serviceNotes><Notes>...</Notes></
>> serviceNotes>?
>>
>> Cheers,
>>
>> Pi
>>
>>
>>>    Martin
>>>
>>> -- 
>>> Martin Senger
>>>    email: martin.senger at gmail.com
>>>    skype: martinsenger
>>> consulting for:
>>>    International Rice Research Institute
>>>    Biometrics and Bioinformatics Unit
>>>    DAPO BOX 7777, Metro Manila
>>>    Philippines, phone: +63-2-580-5600 (ext.2324)
>>>
>>> _______________________________________________
>>> MOBY-dev mailing list
>>> MOBY-dev at biomoby.org
>>> http://biomoby.org/mailman/listinfo/moby-dev
>>>
>>
>>
>> Wageningen University and Research centre (WUR)
>> Laboratory of Bioinformatics
>> Transitorium (building 312) room 1034
>> Dreijenlaan 3
>> 6703 HA Wageningen
>> The Netherlands
>> phone: 0317-483 060
>> fax: 0317-483 584
>> mobile: 06-143 66 783
>> pieter.neerincx at wur.nl
>>
>>
>>
>> _______________________________________________
>> MOBY-dev mailing list
>> MOBY-dev at biomoby.org
>> http://biomoby.org/mailman/listinfo/moby-dev
>>
>>
>>
>
> -- 
> __________________________________________________________
>
> Sebastien CARRERE                        LIPM (INRA-CNRS)
>                       B.P.52627 -- 31326 CASTANET TOLOSAN
> tel:(33) 5-61-28-53-29
> fax:(33) 5-61-28-50-61
> 				
>
> _______________________________________________
> MOBY-dev mailing list
> MOBY-dev at biomoby.org
> http://biomoby.org/mailman/listinfo/moby-dev

Wageningen University and Research centre (WUR)
Laboratory of Bioinformatics
Transitorium (building 312) room 1038
Dreijenlaan 3
6703 HA Wageningen
phone: 0317-484 706
fax: 0317-483 584
mobile: 06-143 66 783
pieter.neerincx at wur.nl