[MOBY-dev] [moby] service registration situation....

[Frank Gibbons]

Thanks Mark - looks like I mis-registered the address, likely a 
mis-configuration of the script I use to register services. Strangely, it 
used to work, but I haven't used it in a while. I'll fix it and try again - 
thanks for quick response, sorry for inconvenience.

My bug.

-Frank

At 01:40 PM 2/28/2006, you wrote:
>Your service registrations are not correct - this is what is in the
>WSDL:
>
><soap:address location="http:///~fgibbons/cgi/BGN/dispatcher.pl"/>
>
>This is confirmed by looking at the database entry:
>| moby     | Uetz        |
>urn:lsid:biomoby.org:servicetype:Retrieval:2001-09-21T16-00-00Z |
>43 | http:///~fgibbons/cgi/BGN/dispatcher.pl | fgibbons at hms.harvard.edu
>| 0             | Protein-protein interactions, by Uetz et al.
>  |                9727 | NULL         |
>urn:lsid:biomoby.org:serviceinstance:llama.med.harvard.edu,Uetz:2006-02-27T19-03-39Z 
>|
>
>
>Can you check if this is a problem with the registration system that you
>are using, or is it something mis-configured at your end?
>
>Whose bug is it??
>
>M
>
>
>
>
>
>On Tue, 2006-02-28 at 12:58 -0500, Frank Gibbons wrote:
> > OK,<soap:address location="http:///~fgibbons/cgi/BGN/dispatcher.pl"/>
> >
> > I got caught up in the service clean-up enthusiasm (roll on spring!),
> > dereg'd all of my services, then rereg'd some of them. All seemed to go
> > smoothly, and I can retrieve service details without difficulty.
> >
> > But now nothing works. As usual, due to the layering inherent in web
> > services (SOAP/HTTP, XML parsing, etc.), I'm having a really hard time
> > figuring out *where* the problem lies.
> >
> > I've tried using scripts/DebugYourService.pl,
> >
> > >DebugYourService.pl -a llama.med.harvard.edu -n Uetz -i simple.xml
> >
> > with this input (simple.xml):
> >
> > ><mobyData>
> > >   <Simple>
> > >     <String namespace='SGD' id='S000004075' />
> > >   </Simple>
> > ></mobyData>
> >
> > and got this output:
> >
> > >Using default BioMOBY Central.
> > >---------------
> > >Using service:
> > >         name: Uetz
> > >         authority: llama.med.harvard.edu
> > >         Description: Protein-protein interactions, by Uetz et al
> > >---------------
> > >Service execution failed: 500 Can't connect to :80 (Bad hostname '') at
> > >MOBY/Client/Service.pm line 289
> >
> > The last line is totally weird! The test suite runs without errors, and 
> I'm
> > using the latest moby-live/Perl code under Perl 5.8.6, with SOAP::Lite 
> v0.60.
> >
> > Anybody have any ideas where I should look?
> >
> > -Frank
> >
> >
> > PhD, Computational Biologist,
> > Harvard Medical School BCMP/SGM-322, 250 Longwood Ave, Boston MA 02115, 
> USA.
> > Tel: 617-432-3555       Fax:
> > 617-432-3557       http://llama.med.harvard.edu/~fgibbons
> >
> > _______________________________________________
> > MOBY-dev mailing list
> > MOBY-dev at biomoby.org
> > http://biomoby.org/mailman/listinfo/moby-dev
>--
>
>--
>Mark Wilkinson
>Asst. Professor, Dept. of Medical Genetics
>University of British Columbia
>PI in Bioinformatics, iCAPTURE Centre
>St. Paul's Hospital, Rm. 166, 1081 Burrard St.
>Vancouver, BC, V6Z 1Y6
>tel: 604 682 2344 x62129
>fax: 604 806 9274
>
>"For most of this century we have viewed communications as a conduit,
>        a pipe between physical locations on the planet.
>What's happened now is that the conduit has become so big and interesting
>       that communication has become more than a conduit,
>        it has become a destination in its own right..."
>
>                 Paul Saffo - Director, Institute for the Future
>
>_______________________________________________
>MOBY-dev mailing list
>MOBY-dev at biomoby.org
>http://biomoby.org/mailman/listinfo/moby-dev

PhD, Computational Biologist,
Harvard Medical School BCMP/SGM-322, 250 Longwood Ave, Boston MA 02115, USA.
Tel: 617-432-3555       Fax: 
617-432-3557       http://llama.med.harvard.edu/~fgibbons