[MOBY-dev] [moby] service registration situation....

[Mark Wilkinson]

no worries :-)

M

On Tue, 2006-02-28 at 13:58 -0500, Frank Gibbons wrote:
> Thanks Mark - looks like I mis-registered the address, likely a 
> mis-configuration of the script I use to register services. Strangely, it 
> used to work, but I haven't used it in a while. I'll fix it and try again - 
> thanks for quick response, sorry for inconvenience.
> 
> My bug.
> 
> -Frank
> 
> At 01:40 PM 2/28/2006, you wrote:
> >Your service registrations are not correct - this is what is in the
> >WSDL:
> >
> ><soap:address location="http:///~fgibbons/cgi/BGN/dispatcher.pl"/>
> >
> >This is confirmed by looking at the database entry:
> >| moby     | Uetz        |
> >urn:lsid:biomoby.org:servicetype:Retrieval:2001-09-21T16-00-00Z |
> >43 | http:///~fgibbons/cgi/BGN/dispatcher.pl | fgibbons at hms.harvard.edu
> >| 0             | Protein-protein interactions, by Uetz et al.
> >  |                9727 | NULL         |
> >urn:lsid:biomoby.org:serviceinstance:llama.med.harvard.edu,Uetz:2006-02-27T19-03-39Z 
> >|
> >
> >
> >Can you check if this is a problem with the registration system that you
> >are using, or is it something mis-configured at your end?
> >
> >Whose bug is it??
> >
> >M
> >
> >
> >
> >
> >
> >On Tue, 2006-02-28 at 12:58 -0500, Frank Gibbons wrote:
> > > OK,<soap:address location="http:///~fgibbons/cgi/BGN/dispatcher.pl"/>
> > >
> > > I got caught up in the service clean-up enthusiasm (roll on spring!),
> > > dereg'd all of my services, then rereg'd some of them. All seemed to go
> > > smoothly, and I can retrieve service details without difficulty.
> > >
> > > But now nothing works. As usual, due to the layering inherent in web
> > > services (SOAP/HTTP, XML parsing, etc.), I'm having a really hard time
> > > figuring out *where* the problem lies.
> > >
> > > I've tried using scripts/DebugYourService.pl,
> > >
> > > >DebugYourService.pl -a llama.med.harvard.edu -n Uetz -i simple.xml
> > >
> > > with this input (simple.xml):
> > >
> > > ><mobyData>
> > > >   <Simple>
> > > >     <String namespace='SGD' id='S000004075' />
> > > >   </Simple>
> > > ></mobyData>
> > >
> > > and got this output:
> > >
> > > >Using default BioMOBY Central.
> > > >---------------
> > > >Using service:
> > > >         name: Uetz
> > > >         authority: llama.med.harvard.edu
> > > >         Description: Protein-protein interactions, by Uetz et al
> > > >---------------
> > > >Service execution failed: 500 Can't connect to :80 (Bad hostname '') at
> > > >MOBY/Client/Service.pm line 289
> > >
> > > The last line is totally weird! The test suite runs without errors, and 
> > I'm
> > > using the latest moby-live/Perl code under Perl 5.8.6, with SOAP::Lite 
> > v0.60.
> > >
> > > Anybody have any ideas where I should look?
> > >
> > > -Frank
> > >
> > >
> > > PhD, Computational Biologist,
> > > Harvard Medical School BCMP/SGM-322, 250 Longwood Ave, Boston MA 02115, 
> > USA.
> > > Tel: 617-432-3555       Fax:
> > > 617-432-3557       http://llama.med.harvard.edu/~fgibbons
> > >
> > > _______________________________________________
> > > MOBY-dev mailing list
> > > MOBY-dev at biomoby.org
> > > http://biomoby.org/mailman/listinfo/moby-dev
> >--
> >
> >--
> >Mark Wilkinson
> >Asst. Professor, Dept. of Medical Genetics
> >University of British Columbia
> >PI in Bioinformatics, iCAPTURE Centre
> >St. Paul's Hospital, Rm. 166, 1081 Burrard St.
> >Vancouver, BC, V6Z 1Y6
> >tel: 604 682 2344 x62129
> >fax: 604 806 9274
> >
> >"For most of this century we have viewed communications as a conduit,
> >        a pipe between physical locations on the planet.
> >What's happened now is that the conduit has become so big and interesting
> >       that communication has become more than a conduit,
> >        it has become a destination in its own right..."
> >
> >                 Paul Saffo - Director, Institute for the Future
> >
> >_______________________________________________
> >MOBY-dev mailing list
> >MOBY-dev at biomoby.org
> >http://biomoby.org/mailman/listinfo/moby-dev
> 
> PhD, Computational Biologist,
> Harvard Medical School BCMP/SGM-322, 250 Longwood Ave, Boston MA 02115, USA.
> Tel: 617-432-3555       Fax: 
> 617-432-3557       http://llama.med.harvard.edu/~fgibbons 
> 
> _______________________________________________
> MOBY-dev mailing list
> MOBY-dev at biomoby.org
> http://biomoby.org/mailman/listinfo/moby-dev
-- 

--
Mark Wilkinson
Asst. Professor, Dept. of Medical Genetics
University of British Columbia
PI in Bioinformatics, iCAPTURE Centre
St. Paul's Hospital, Rm. 166, 1081 Burrard St.
Vancouver, BC, V6Z 1Y6
tel: 604 682 2344 x62129
fax: 604 806 9274

"For most of this century we have viewed communications as a conduit, 
       a pipe between physical locations on the planet. 
What's happened now is that the conduit has become so big and interesting 
      that communication has become more than a conduit, 
       it has become a destination in its own right..."

                Paul Saffo - Director, Institute for the Future