[MOBY-dev] Problem with Biomoby 0.8.2 Perl libraries

[Rebecca Ernst]

Hi Arnaud!

I am not sure if you are facing the same problem that we did... possibly 
the registry you want to contact doesn't contain the colunm 'lsid' this 
needs to be updated along with the new code so you have to modify your 
database like this: "alter table service_instance add lsid VARCHAR (255) 
NOT NULL default ''; "

Cheers,
Rebecca


Arnaud Kerhornou wrote:

> Hi,
>
> I am working for the INB in Spain setting up Moby Web services, and I 
> am trying to switch my code to use the new release, BioMoby 0.8.2 (was 
> using BioMoby 0.8.1 before).
>
> I have a client script that is interrogating a registry server and ask 
> for a given service. If the registry server is the following one, 
> http://mobycentral.icapture.ubc.ca/MOBY/Central, it works fine but if 
> I want to interrogate another one, I am getting an error.
>
> I am instanciating a Central object with the following parameters,
>
>    => URL: http://chirimoyo.ac.uma.es/cgi-bin/MOBY-Central.pl
>    => URI: http://chirimoyo.ac.uma.es/MOBY/Central
>    => Proxy: No Proxy Server
>
> The instanciation of Central seems to go okay, but then when I want to 
> execute 'findService' method, I get the following error:
> ------------------------->
> Can't call method "getValue" on an undefined value at 
> /home/ug/arnau/lib/biomoby.0.8.2/Perl/MOBY/Client/Central.pm line 1728
> <-------------------------
>
> Central.pm line 1728 is the following one (in _parseServices method)
>
> my $lsid = $Service->getAttributeNode('lsid')->getValue;
>
> Any clue of what is going wrong or do I need to update my client code ?
>
> Thanks
> Arnaud
>
>     
>
>     
>        
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-- 
Rebecca Ernst
MIPS, Inst. for Bioinformatics
GSF Research Center for Environment and Health
Ingolstaedter Landstr. 1
85764 Neuherberg
fon: +49 89 3187 3583
email: Rebecca.Ernst at gsf.de