[EMBOSS] contributing to emboss

[Afif Elghraoui]

Thanks for the update!

> Then the fun starts. Any suggestions for new features?

Nothing particularly fancy. What I was primarily interested in was an
option for seqret to not include the genome sequence in gff output.
But overall, and maybe this is too much, I would've loved for the emboss
tools to be more in the unix filter style. Like if I could just

  samtools faidx gene | transeq ...

to get a translation, etc.

many thanks and regards
Afif

On Tue, Jun 21, 2022 at 3:21 PM Peter Rice <ricepeterm at yahoo.co.uk> wrote:

> Hi Afif,
>
> Yes... it is in progress. My hopes to recover the CVS server (and all
> the individual commits) came to nothing - there was no useable backup.
>
> However, we do have all the old releases since the very early days, So I
> have been putting them on to github. That will give us a record of every
> release and a summary of all the changes made.
>
> Almost there, but I have to keep up with my tranSMART development tasks
> too. However, the tranSMART beta release went out today, so I will soon
> have thew final rel;ease done and some free time to catch right up to
> the last EMBOSS release.
>
> Then the fun starts. Any suggestions for new features? I can start with
> removing anything too far out of date (including some of the extra data
> resources we added 10 years ago) and updating the external libraries.
>
> The github repository is at https://github.com/oryzabioinformatics (but
> wait for the 6.6.0 branch to appear - it is up to 6.4.0 so far, so
> nearly there)
>
> regards,
>
> Peter Rice
>
> On 21/06/2022 22:23, Afif Elghraoui wrote:
> > Hello,
> > I saw an old message on the -dev list that there was some migration to
> > github in progress:
> >
> https://mailman.open-bio.org/pipermail/emboss-dev/2018-January/001502.html
> > <
> https://mailman.open-bio.org/pipermail/emboss-dev/2018-January/001502.html>
>
> >
> >
> > Did anything ever happen with that?
> >
> > thanks
> > Afif
> >
> > _______________________________________________
> > EMBOSS mailing list
> > EMBOSS at mailman.open-bio.org
> > https://mailman.open-bio.org/mailman/listinfo/emboss
>
> --
> This email has been checked for viruses by AVG.
> https://www.avg.com
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/emboss/attachments/20220621/41b54995/attachment.htm>