[EMBOSS] FUZZNUC

Mahmut Uludag uludag at ebi.ac.uk
Mon Mar 10 13:49:28 UTC 2014


Hi Tala,

I later have noticed that i missed copying my message to the emboss 
list, i do it now. I hope you are now able to use fuzznuc with pattern 
files.

--mahmut


>> Warning: Illegal character [@]
>>
>>   EMBOSS An error in fuzznuc.c at line 101:
>> Illegal pattern
>
> Maybe you are using an older version of EMBOSS?
>
> I get following errors if i specify a pattern file without giving its
> full path.
>
> Search for patterns in nucleotide sequences
> Error: Unable to open pattern file 'pattern.txt'
> Error: Bad pattern definition:
>     '@pattern.txt'
>
>
> It would be best to move to latest EMBOSS and try command line EMBOSS
> since it is better maintained than Jemboss/mEMBOSS.
>
> --mahmut



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