[EMBOSS] FUZZNUC

Mahmut Uludag uludag at ebi.ac.uk
Sun Mar 9 20:53:52 UTC 2014


Hi Tala,

I have tried using a pattern file with mEMBOSS 6.5. If i don't add the 
prefix '@' character before the pattern file name jemboss provides name 
of the file as the input pattern to emboss fuzznuc program which then 
returns no hits.

i.e., this pattern file works

@C:\Users\alice\Documents\fuzznuc.pat.txt

however, if i miss the '@' prefix as in the following example, file name 
itself is considered as the pattern for search and no hit is found.

C:\Users\alice\Documents\fuzznuc.pat.txt


Please let us know if you still get errors.

-- mahmut

> I am trying to run FUZZNUC in  EMBOSSwin and JEMBOSS with a list of
> patterns. Can you advice on how to do that, where I am getting errors with
> @patternfile.txt
>




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