[EMBOSS] error while loading shared libraries: libnucleus.so.6

[wo.granon at gmail.com]

Thank you for your help. Really strange.

Following situation:
# ls  /usr/share/EMBOSS/
emboss.default
# ls /usr/local/share/EMBOSS/
acd  data  doc  emboss.default.template  jemboss  plstnd5.fnt  plxtnd5.fnt  test

Then i looked into /usr/share/EMBOSS/emboss.default, but there is no
variable EMBOSS_ACDROOT set. Could it be set elsewhere?

Thanks,
Wolfgang





2011/1/12  <ajb at ebi.ac.uk>:
> Well if you've installed to /usr/local then it should be
> looking for that file in /usr/local/share/EMBOSS/acd/embossversion.acd
>
> As it's looking under /usr/share... my first suspicion would be that
> you've set an environment variable incorrectly (e.g.
> EMBOSS_ACDROOT). You should not really need to set any EMBOSS
> environment variables, it should work OK without. So, if
> you have set any such envvars then try unsetting them and run
> the program again.
>
> Alan
>
>
>
>
>> Thank you, that did the job! But now i have an other error for which i
>> also can't find anything in the web:
>>
>> # embossversion
>> Error: File /usr/share/EMBOSS/acd/embossversion.acd line 0: ACD file not
>> opened
>>
>> Can you help me again?
>>
>> Thanks,
>> Wolfgang
>>
>> 2011/1/12  <ajb at ebi.ac.uk>:
>>> Hello Wolfgang,
>>>
>>> On OpenSuse that error usually means you've installed EMBOSS into
>>> /usr/local such that the libraries are in /usr/local/lib. That
>>> library directory is cached on OpenSuse so all you should need to do is,
>>> with privilege, type "/sbin/ldconfig" to rebuild the cache.
>>>
>>> HTH
>>>
>>> Alan
>>>
>>>
>>>
>>>> Hello,
>>>>
>>>> I installed stable EMBOSS 6.3.1 on OpenSuse 11.3.
>>>>
>>>> ./configure, make and make install ran without an error. But when I
>>>> try to run an EMBOSS app, i get the following error:
>>>>
>>>> # embossversion
>>>> embossversion: error while loading shared libraries: libnucleus.so.6:
>>>> cannot open shared object file: No such file or directory
>>>>
>>>> I think the attached output could help. Does anyone know what is wrong
>>>> with my installation? Do you need additional data?
>>>>
>>>> Thanks,
>>>> Wolfgang
>>>>
>>>> # ldd $(which embossversion)
>>>>         linux-gate.so.1 =>  (0xffffe000)
>>>>         libnucleus.so.6 => not found
>>>>         libacd.so.6 => not found
>>>>         libajaxdb.so.6 => not found
>>>>         libensembl.so.6 => not found
>>>>         libajaxg.so.6 => not found
>>>>         libajax.so.6 => not found
>>>>         libezlib.so.1 => not found
>>>>         libeexpat.so.1 => not found
>>>>         libepcre.so.7 => not found
>>>>         libeplplot.so.3 => not found
>>>>         libpq.so.5 => /usr/lib/libpq.so.5 (0xb77a4000)
>>>>         libX11.so.6 => /usr/lib/libX11.so.6 (0xb7669000)
>>>>         libgd.so.2 => /usr/lib/libgd.so.2 (0xb7622000)
>>>>         libpng14.so.14 => /usr/lib/libpng14.so.14 (0xb75f6000)
>>>>         libz.so.1 => /lib/libz.so.1 (0xb75e1000)
>>>>         libm.so.6 => /lib/libm.so.6 (0xb75b7000)
>>>>         libc.so.6 => /lib/libc.so.6 (0xb744c000)
>>>>         libssl.so.1.0.0 => /lib/libssl.so.1.0.0 (0xb73f5000)
>>>>         libcrypto.so.1.0.0 => /lib/libcrypto.so.1.0.0 (0xb7255000)
>>>>         libkrb5.so.3 => /usr/lib/libkrb5.so.3 (0xb718d000)
>>>>         libcom_err.so.2 => /lib/libcom_err.so.2 (0xb7187000)
>>>>         libgssapi_krb5.so.2 => /usr/lib/libgssapi_krb5.so.2
>>>> (0xb7150000)
>>>>         libldap_r-2.4.so.2 => /usr/lib/libldap_r-2.4.so.2 (0xb7100000)
>>>>         libpthread.so.0 => /lib/libpthread.so.0 (0xb70e5000)
>>>>         libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb70c5000)
>>>>         libdl.so.2 => /lib/libdl.so.2 (0xb70bf000)
>>>>         libXpm.so.4 => /usr/lib/libXpm.so.4 (0xb70ac000)
>>>>         libjpeg.so.8 => /usr/lib/libjpeg.so.8 (0xb7073000)
>>>>         libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb703d000)
>>>>         libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb6fb6000)
>>>>         /lib/ld-linux.so.2 (0xb77e3000)
>>>>         libk5crypto.so.3 => /usr/lib/libk5crypto.so.3 (0xb6f8d000)
>>>>         libkrb5support.so.0 => /usr/lib/libkrb5support.so.0
>>>> (0xb6f84000)
>>>>         libkeyutils.so.1 => /lib/libkeyutils.so.1 (0xb6f80000)
>>>>         libresolv.so.2 => /lib/libresolv.so.2 (0xb6f69000)
>>>>         liblber-2.4.so.2 => /usr/lib/liblber-2.4.so.2 (0xb6f59000)
>>>>         libsasl2.so.2 => /usr/lib/libsasl2.so.2 (0xb6f3d000)
>>>>         libXau.so.6 => /usr/lib/libXau.so.6 (0xb6f39000)
>>>>         libexpat.so.1 => /lib/libexpat.so.1 (0xb6f0f000)
>>>> _______________________________________________
>>>> EMBOSS mailing list
>>>> EMBOSS at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/emboss
>>>>
>>>
>>>
>>>
>>
>
>
>