[EMBOSS] error while loading shared libraries: libnucleus.so.6

wo.granon at gmail.com wo.granon at gmail.com
Wed Jan 12 17:48:35 UTC 2011


Thank you, that did the job! But now i have an other error for which i
also can't find anything in the web:

# embossversion
Error: File /usr/share/EMBOSS/acd/embossversion.acd line 0: ACD file not opened

Can you help me again?

Thanks,
Wolfgang

2011/1/12  <ajb at ebi.ac.uk>:
> Hello Wolfgang,
>
> On OpenSuse that error usually means you've installed EMBOSS into
> /usr/local such that the libraries are in /usr/local/lib. That
> library directory is cached on OpenSuse so all you should need to do is,
> with privilege, type "/sbin/ldconfig" to rebuild the cache.
>
> HTH
>
> Alan
>
>
>
>> Hello,
>>
>> I installed stable EMBOSS 6.3.1 on OpenSuse 11.3.
>>
>> ./configure, make and make install ran without an error. But when I
>> try to run an EMBOSS app, i get the following error:
>>
>> # embossversion
>> embossversion: error while loading shared libraries: libnucleus.so.6:
>> cannot open shared object file: No such file or directory
>>
>> I think the attached output could help. Does anyone know what is wrong
>> with my installation? Do you need additional data?
>>
>> Thanks,
>> Wolfgang
>>
>> # ldd $(which embossversion)
>>         linux-gate.so.1 =>  (0xffffe000)
>>         libnucleus.so.6 => not found
>>         libacd.so.6 => not found
>>         libajaxdb.so.6 => not found
>>         libensembl.so.6 => not found
>>         libajaxg.so.6 => not found
>>         libajax.so.6 => not found
>>         libezlib.so.1 => not found
>>         libeexpat.so.1 => not found
>>         libepcre.so.7 => not found
>>         libeplplot.so.3 => not found
>>         libpq.so.5 => /usr/lib/libpq.so.5 (0xb77a4000)
>>         libX11.so.6 => /usr/lib/libX11.so.6 (0xb7669000)
>>         libgd.so.2 => /usr/lib/libgd.so.2 (0xb7622000)
>>         libpng14.so.14 => /usr/lib/libpng14.so.14 (0xb75f6000)
>>         libz.so.1 => /lib/libz.so.1 (0xb75e1000)
>>         libm.so.6 => /lib/libm.so.6 (0xb75b7000)
>>         libc.so.6 => /lib/libc.so.6 (0xb744c000)
>>         libssl.so.1.0.0 => /lib/libssl.so.1.0.0 (0xb73f5000)
>>         libcrypto.so.1.0.0 => /lib/libcrypto.so.1.0.0 (0xb7255000)
>>         libkrb5.so.3 => /usr/lib/libkrb5.so.3 (0xb718d000)
>>         libcom_err.so.2 => /lib/libcom_err.so.2 (0xb7187000)
>>         libgssapi_krb5.so.2 => /usr/lib/libgssapi_krb5.so.2 (0xb7150000)
>>         libldap_r-2.4.so.2 => /usr/lib/libldap_r-2.4.so.2 (0xb7100000)
>>         libpthread.so.0 => /lib/libpthread.so.0 (0xb70e5000)
>>         libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb70c5000)
>>         libdl.so.2 => /lib/libdl.so.2 (0xb70bf000)
>>         libXpm.so.4 => /usr/lib/libXpm.so.4 (0xb70ac000)
>>         libjpeg.so.8 => /usr/lib/libjpeg.so.8 (0xb7073000)
>>         libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb703d000)
>>         libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb6fb6000)
>>         /lib/ld-linux.so.2 (0xb77e3000)
>>         libk5crypto.so.3 => /usr/lib/libk5crypto.so.3 (0xb6f8d000)
>>         libkrb5support.so.0 => /usr/lib/libkrb5support.so.0 (0xb6f84000)
>>         libkeyutils.so.1 => /lib/libkeyutils.so.1 (0xb6f80000)
>>         libresolv.so.2 => /lib/libresolv.so.2 (0xb6f69000)
>>         liblber-2.4.so.2 => /usr/lib/liblber-2.4.so.2 (0xb6f59000)
>>         libsasl2.so.2 => /usr/lib/libsasl2.so.2 (0xb6f3d000)
>>         libXau.so.6 => /usr/lib/libXau.so.6 (0xb6f39000)
>>         libexpat.so.1 => /lib/libexpat.so.1 (0xb6f0f000)
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>>
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