[EMBOSS] error while loading shared libraries: libnucleus.so.6

[wo.granon at gmail.com]

Thank you, problem solved. Starting the system new solved the problem
;-) There must have been some variables from a previous installation
set.

Wolfgang

2011/1/12  <wo.granon at gmail.com>:
> Thank you for your help. Really strange.
>
> Following situation:
> # ls  /usr/share/EMBOSS/
> emboss.default
> # ls /usr/local/share/EMBOSS/
> acd  data  doc  emboss.default.template  jemboss  plstnd5.fnt  plxtnd5.fnt  test
>
> Then i looked into /usr/share/EMBOSS/emboss.default, but there is no
> variable EMBOSS_ACDROOT set. Could it be set elsewhere?
>
> Thanks,
> Wolfgang
>
>
>
>
>
> 2011/1/12  <ajb at ebi.ac.uk>:
>> Well if you've installed to /usr/local then it should be
>> looking for that file in /usr/local/share/EMBOSS/acd/embossversion.acd
>>
>> As it's looking under /usr/share... my first suspicion would be that
>> you've set an environment variable incorrectly (e.g.
>> EMBOSS_ACDROOT). You should not really need to set any EMBOSS
>> environment variables, it should work OK without. So, if
>> you have set any such envvars then try unsetting them and run
>> the program again.
>>
>> Alan
>>
>>
>>
>>
>>> Thank you, that did the job! But now i have an other error for which i
>>> also can't find anything in the web:
>>>
>>> # embossversion
>>> Error: File /usr/share/EMBOSS/acd/embossversion.acd line 0: ACD file not
>>> opened
>>>
>>> Can you help me again?
>>>
>>> Thanks,
>>> Wolfgang
>>>
>>> 2011/1/12  <ajb at ebi.ac.uk>:
>>>> Hello Wolfgang,
>>>>
>>>> On OpenSuse that error usually means you've installed EMBOSS into
>>>> /usr/local such that the libraries are in /usr/local/lib. That
>>>> library directory is cached on OpenSuse so all you should need to do is,
>>>> with privilege, type "/sbin/ldconfig" to rebuild the cache.
>>>>
>>>> HTH
>>>>
>>>> Alan
>>>>
>>>>
>>>>
>>>>> Hello,
>>>>>
>>>>> I installed stable EMBOSS 6.3.1 on OpenSuse 11.3.
>>>>>
>>>>> ./configure, make and make install ran without an error. But when I
>>>>> try to run an EMBOSS app, i get the following error:
>>>>>
>>>>> # embossversion
>>>>> embossversion: error while loading shared libraries: libnucleus.so.6:
>>>>> cannot open shared object file: No such file or directory
>>>>>
>>>>> I think the attached output could help. Does anyone know what is wrong
>>>>> with my installation? Do you need additional data?
>>>>>
>>>>> Thanks,
>>>>> Wolfgang
>>>>>
>>>>> # ldd $(which embossversion)
>>>>>         linux-gate.so.1 =>  (0xffffe000)
>>>>>         libnucleus.so.6 => not found
>>>>>         libacd.so.6 => not found
>>>>>         libajaxdb.so.6 => not found
>>>>>         libensembl.so.6 => not found
>>>>>         libajaxg.so.6 => not found
>>>>>         libajax.so.6 => not found
>>>>>         libezlib.so.1 => not found
>>>>>         libeexpat.so.1 => not found
>>>>>         libepcre.so.7 => not found
>>>>>         libeplplot.so.3 => not found
>>>>>         libpq.so.5 => /usr/lib/libpq.so.5 (0xb77a4000)
>>>>>         libX11.so.6 => /usr/lib/libX11.so.6 (0xb7669000)
>>>>>         libgd.so.2 => /usr/lib/libgd.so.2 (0xb7622000)
>>>>>         libpng14.so.14 => /usr/lib/libpng14.so.14 (0xb75f6000)
>>>>>         libz.so.1 => /lib/libz.so.1 (0xb75e1000)
>>>>>         libm.so.6 => /lib/libm.so.6 (0xb75b7000)
>>>>>         libc.so.6 => /lib/libc.so.6 (0xb744c000)
>>>>>         libssl.so.1.0.0 => /lib/libssl.so.1.0.0 (0xb73f5000)
>>>>>         libcrypto.so.1.0.0 => /lib/libcrypto.so.1.0.0 (0xb7255000)
>>>>>         libkrb5.so.3 => /usr/lib/libkrb5.so.3 (0xb718d000)
>>>>>         libcom_err.so.2 => /lib/libcom_err.so.2 (0xb7187000)
>>>>>         libgssapi_krb5.so.2 => /usr/lib/libgssapi_krb5.so.2
>>>>> (0xb7150000)
>>>>>         libldap_r-2.4.so.2 => /usr/lib/libldap_r-2.4.so.2 (0xb7100000)
>>>>>         libpthread.so.0 => /lib/libpthread.so.0 (0xb70e5000)
>>>>>         libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb70c5000)
>>>>>         libdl.so.2 => /lib/libdl.so.2 (0xb70bf000)
>>>>>         libXpm.so.4 => /usr/lib/libXpm.so.4 (0xb70ac000)
>>>>>         libjpeg.so.8 => /usr/lib/libjpeg.so.8 (0xb7073000)
>>>>>         libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb703d000)
>>>>>         libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb6fb6000)
>>>>>         /lib/ld-linux.so.2 (0xb77e3000)
>>>>>         libk5crypto.so.3 => /usr/lib/libk5crypto.so.3 (0xb6f8d000)
>>>>>         libkrb5support.so.0 => /usr/lib/libkrb5support.so.0
>>>>> (0xb6f84000)
>>>>>         libkeyutils.so.1 => /lib/libkeyutils.so.1 (0xb6f80000)
>>>>>         libresolv.so.2 => /lib/libresolv.so.2 (0xb6f69000)
>>>>>         liblber-2.4.so.2 => /usr/lib/liblber-2.4.so.2 (0xb6f59000)
>>>>>         libsasl2.so.2 => /usr/lib/libsasl2.so.2 (0xb6f3d000)
>>>>>         libXau.so.6 => /usr/lib/libXau.so.6 (0xb6f39000)
>>>>>         libexpat.so.1 => /lib/libexpat.so.1 (0xb6f0f000)
>>>>> _______________________________________________
>>>>> EMBOSS mailing list
>>>>> EMBOSS at lists.open-bio.org
>>>>> http://lists.open-bio.org/mailman/listinfo/emboss
>>>>>
>>>>
>>>>
>>>>
>>>
>>
>>
>>
>