[EMBOSS] error while loading shared libraries: libnucleus.so.6

ajb at ebi.ac.uk ajb at ebi.ac.uk
Wed Jan 12 17:37:05 UTC 2011


Hello Wolfgang,

On OpenSuse that error usually means you've installed EMBOSS into
/usr/local such that the libraries are in /usr/local/lib. That
library directory is cached on OpenSuse so all you should need to do is,
with privilege, type "/sbin/ldconfig" to rebuild the cache.

HTH

Alan



> Hello,
>
> I installed stable EMBOSS 6.3.1 on OpenSuse 11.3.
>
> ./configure, make and make install ran without an error. But when I
> try to run an EMBOSS app, i get the following error:
>
> # embossversion
> embossversion: error while loading shared libraries: libnucleus.so.6:
> cannot open shared object file: No such file or directory
>
> I think the attached output could help. Does anyone know what is wrong
> with my installation? Do you need additional data?
>
> Thanks,
> Wolfgang
>
> # ldd $(which embossversion)
>         linux-gate.so.1 =>  (0xffffe000)
>         libnucleus.so.6 => not found
>         libacd.so.6 => not found
>         libajaxdb.so.6 => not found
>         libensembl.so.6 => not found
>         libajaxg.so.6 => not found
>         libajax.so.6 => not found
>         libezlib.so.1 => not found
>         libeexpat.so.1 => not found
>         libepcre.so.7 => not found
>         libeplplot.so.3 => not found
>         libpq.so.5 => /usr/lib/libpq.so.5 (0xb77a4000)
>         libX11.so.6 => /usr/lib/libX11.so.6 (0xb7669000)
>         libgd.so.2 => /usr/lib/libgd.so.2 (0xb7622000)
>         libpng14.so.14 => /usr/lib/libpng14.so.14 (0xb75f6000)
>         libz.so.1 => /lib/libz.so.1 (0xb75e1000)
>         libm.so.6 => /lib/libm.so.6 (0xb75b7000)
>         libc.so.6 => /lib/libc.so.6 (0xb744c000)
>         libssl.so.1.0.0 => /lib/libssl.so.1.0.0 (0xb73f5000)
>         libcrypto.so.1.0.0 => /lib/libcrypto.so.1.0.0 (0xb7255000)
>         libkrb5.so.3 => /usr/lib/libkrb5.so.3 (0xb718d000)
>         libcom_err.so.2 => /lib/libcom_err.so.2 (0xb7187000)
>         libgssapi_krb5.so.2 => /usr/lib/libgssapi_krb5.so.2 (0xb7150000)
>         libldap_r-2.4.so.2 => /usr/lib/libldap_r-2.4.so.2 (0xb7100000)
>         libpthread.so.0 => /lib/libpthread.so.0 (0xb70e5000)
>         libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb70c5000)
>         libdl.so.2 => /lib/libdl.so.2 (0xb70bf000)
>         libXpm.so.4 => /usr/lib/libXpm.so.4 (0xb70ac000)
>         libjpeg.so.8 => /usr/lib/libjpeg.so.8 (0xb7073000)
>         libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb703d000)
>         libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb6fb6000)
>         /lib/ld-linux.so.2 (0xb77e3000)
>         libk5crypto.so.3 => /usr/lib/libk5crypto.so.3 (0xb6f8d000)
>         libkrb5support.so.0 => /usr/lib/libkrb5support.so.0 (0xb6f84000)
>         libkeyutils.so.1 => /lib/libkeyutils.so.1 (0xb6f80000)
>         libresolv.so.2 => /lib/libresolv.so.2 (0xb6f69000)
>         liblber-2.4.so.2 => /usr/lib/liblber-2.4.so.2 (0xb6f59000)
>         libsasl2.so.2 => /usr/lib/libsasl2.so.2 (0xb6f3d000)
>         libXau.so.6 => /usr/lib/libXau.so.6 (0xb6f39000)
>         libexpat.so.1 => /lib/libexpat.so.1 (0xb6f0f000)
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