[EMBOSS] recursive backtranslate
pmr at ebi.ac.uk
Fri Mar 13 09:30:35 UTC 2009
david.bauer at bayerhealthcare.com wrote:
emboss-bounces at lists.open-bio.org schrieb am 13/03/2009 01:13:15:
> > Is it possible to give backtranseq a muliple fasta file as input and
> > have all the sequences in it translated?
> > I have tried several times but backtranseq backtranslates just the
> > first sequence of my multiple fasta file.
> it just takes one sequence as input.
> For your problem you can either use "seqretsplit" to split up our file
> into individual sequences or you can write a script which iterates through
> the multiple fasta file with "skipseq" and sends its output to
We have already extended backtranseq for the next release to work over
The changes needed are not difficult if you want to try a little
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