[EMBOSS] Align 12bp DNA back to genome
Peter Rice
pmr at ebi.ac.uk
Fri Feb 6 16:42:27 UTC 2009
Aengus Stewart wrote:
> After trimming a bunch of illumina reads I have sequences that are 12bp
> long and "we" want to find their genomic location
Can you say that they should match exactly (depending on the size of
genome, and the accuracy of the reads)?
A word matching algorithm should work well.
How many reads do you have?
This is actually a problem we are very interested in writing EMBOSS
applications for.
regards,
Peter
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