[EMBOSS] density

[Sebastien Moretti]

Sorry,
the service, which provides EMBOSS tools as web interface, fails to 
interprets properly the density ACD file.

Everything is fine in the ACD.

> Hi,
> 
> colourps and cps are synonymous so you should be able to use either.
> If you want to specify the output type from the command line
> you could type:
> 
>   density -quad -qgraph=colourps inputsequence
> 
> for a quad graph (qgraph, not ggraph in your email) or, for a dual graph
> 
>   density -dual -dgraph=cps inputsequence
> 
> or am I misunderstanding your question?
> 
> HTH
> 
> Alan
> 
> 
>> Hi,
>>
>> According to the ACD file, the density application seems to use the
>> 'graph' qualifier.
>>
>> When used, I get this error message:
>> Unknown qualifier -graph=colourps
>>
>>
>> graph seems to have been replaced by ggraph and dgraph.
>> And colourps seems to be cps now.
>>
>>
>> How to fix it in the source ?
>> Thanks

-- 
Sébastien Moretti
SIB EMBnet, Quartier Sorge - Genopode
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4056/4221
http://ch.embnet.org/  http://myhits.vital-it.ch/