[EMBOSS] density

[ajb at ebi.ac.uk]

Hi,

colourps and cps are synonymous so you should be able to use either.
If you want to specify the output type from the command line
you could type:

  density -quad -qgraph=colourps inputsequence

for a quad graph (qgraph, not ggraph in your email) or, for a dual graph

  density -dual -dgraph=cps inputsequence

or am I misunderstanding your question?

HTH

Alan


> Hi,
>
> According to the ACD file, the density application seems to use the
> 'graph' qualifier.
>
> When used, I get this error message:
> Unknown qualifier -graph=colourps
>
>
> graph seems to have been replaced by ggraph and dgraph.
> And colourps seems to be cps now.
>
>
> How to fix it in the source ?
> Thanks
>
> --
> Sébastien Moretti
> SIB EMBnet, Quartier Sorge - Genopode
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