[EMBOSS] density

ajb at ebi.ac.uk ajb at ebi.ac.uk
Wed Oct 22 21:09:15 UTC 2008


Hi,

colourps and cps are synonymous so you should be able to use either.
If you want to specify the output type from the command line
you could type:

  density -quad -qgraph=colourps inputsequence

for a quad graph (qgraph, not ggraph in your email) or, for a dual graph

  density -dual -dgraph=cps inputsequence

or am I misunderstanding your question?

HTH

Alan


> Hi,
>
> According to the ACD file, the density application seems to use the
> 'graph' qualifier.
>
> When used, I get this error message:
> Unknown qualifier -graph=colourps
>
>
> graph seems to have been replaced by ggraph and dgraph.
> And colourps seems to be cps now.
>
>
> How to fix it in the source ?
> Thanks
>
> --
> Sébastien Moretti
> SIB EMBnet, Quartier Sorge - Genopode
> CH-1015 Lausanne, Switzerland
> Tel.: +41 (21) 692 4056/4221
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