[EMBOSS] EMBOSS remote server list?

Guy Bottu gbottu at vub.ac.be
Fri Oct 10 07:52:07 UTC 2008


Ashika Umanga Umagiliya wrote:
> It would be much appreciated if anyway can give me some working remove 
> DB Urls to use with entret.

You could try these :
DB ncbi_nuc [ type: N method: entrez format: genbank
               comment: 'nonredundant nuc. acid db at NCBI (by GI number)'
]

DB ncbi_prot [ type: P method: entrez format: genbank
               comment: 'nonredundant protein db at NCBI (by GI number)'
]

DB cmbi_sw [ type: P comment: 'SwissProt at CMBI'
              method: mrs3 dbalias: sprot format: swiss
              url: 'http://mrs.cmbi.ru.nl/mrs-web/plain.do'
]
(you can only use the entry name as identifier, e.g. cmbi_sw:papa1_carpa ; you 
can figure out what databases besided "sprot" are available at 
http://mrs.cmbi.ru.nl/mrs-web/status.do?method=databanks)

	Hope this helps,
	Guy Bottu,
	Belgian EMBnet Node




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