[EMBOSS] HELP!! ePrimer3 service down?

[Peter Schüffler]

Well, it works, but there is a difference:

I use the params mintm and maxtm for eprimer3. These values must now be 
integers (formaly, they were doubles - now, when they are doubles, an 
Error arises without successful primer findings).

Don't now if this concerns also other params...


AxisFault
 faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
 faultString: java.lang.IllegalArgumentException: Conversion to 
SoaplabMap failed: Found an unsupported type 'java.lang.Double'.
 faultActor: null
 faultDetail:
        hostname: web57-node1.ebi.ac.uk

java.lang.IllegalArgumentException: Conversion to SoaplabMap failed: 
Found an unsupported type 'java.lang.Double'.
        at 
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:135)
        at 
org.apache.axis.encoding.DeserializationContextImpl.endElement(DeserializationContextImpl.java:942)
        at 
org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source)
        at 
org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown 
Source)
        at 
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown 
Source)
        at 
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown 
Source)
        at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
        at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
        at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
        at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
        at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)




Peter Schüffler wrote:
> Seems to work. No Error message, and normal output.
>
> THANK YOU!!!
>
>
>
>
> Mahmut Uludag wrote:
>> Hi Peter,
>>
>>  
>>> But for a while, the service doesn't work (but has worked before!).
>>>     
>>
>> Can you please try running the service again? We recently moved the
>> server to Soaplab-2 where we have some changes in the generic input
>> maps. I have checked in a fix for this problem and updated the server
>> and will later discuss this issue with Martin for a proper fix that
>> might go into the soaplab-2 code base.
>>
>> Regards,
>> Mahmut
>>
>>
>>  
>>> Here my source code and the failure message from Java.
>>>
>>> Do I something wrong, or does server something wrong?
>>>
>>> THANK YOU!!!
>>>
>>> Peter
>>>
>>>
>>> public static void main(String[] args) {
>>>         String seq = 
>>> "TCTAGAAAAATTTTTTAAAAAATTAGGCCGCTCGAGCGAGAGTGCAGTGGCTCACGCCTGTAATCCAACA" 
>>> +
>>>                             
>>> "CTTCAGGAGGCTGAAGAGGGTGGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAA"; 
>>>
>>>
>>>         try {
>>>             // CONSTRUCT THE SERVICE
>>>
>>>             AnalysisServiceService service = new 
>>> AnalysisServiceServiceLocator();
>>>             Nucleic_PrimersEprimer3SoapBindingStub primer = 
>>> (Nucleic_PrimersEprimer3SoapBindingStub) 
>>> service.getNucleic_PrimersEprimer3();
>>>                        // SET UP THE PARAMETERS
>>>             HashMap params = new HashMap();
>>>             params.put("sequence_direct_data", seq);
>>>             params.put("task", 1);
>>>             params.put("numreturn", 100);
>>>
>>>             // RUN ePRIMER3
>>>             HashMap result = primer.runAndWaitFor(params);
>>>
>>>             String output = (String) result.get("outfile");
>>>             System.out.println(output);
>>>
>>>         } catch (RemoteException ex) {
>>>             
>>> Logger.getLogger(Eprimer3.class.getName()).log(Level.SEVERE, null, ex);
>>>         } catch (Exception ex) {
>>>             
>>> Logger.getLogger(Eprimer3.class.getName()).log(Level.SEVERE, null, ex);
>>>         }
>>>     }
>>>
>>>
>>>
>>> HERE THE MESSAGE::
>>>
>>> Mar 28, 2008 11:24:07 AM mm_filters.Eprimer3 main
>>> SEVERE: null
>>> AxisFault
>>>  faultCode: 
>>> {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
>>>  faultString: java.lang.IllegalArgumentException: Conversion to 
>>> SoaplabMap failed: Found an unsupported type 'java.lang.Integer'.
>>>  faultActor: null
>>>  faultDetail:
>>>         hostname: web57-node1.ebi.ac.uk
>>>
>>> java.lang.IllegalArgumentException: Conversion to SoaplabMap failed: 
>>> Found an unsupported type 'java.lang.Integer'.
>>>         at 
>>> org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:135) 
>>>
>>>         at 
>>> org.apache.axis.encoding.DeserializationContextImpl.endElement(DeserializationContextImpl.java:942) 
>>>
>>>         at 
>>> org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source)
>>>         at 
>>> org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown 
>>> Source)
>>>         at 
>>> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown 
>>> Source)
>>>         at 
>>> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown 
>>> Source)
>>>         at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown 
>>> Source)
>>>         at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown 
>>> Source)
>>>         at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
>>>         at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown 
>>> Source)
>>>         at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
>>>         at 
>>> org.apache.axis.encoding.DeserializationContextImpl.parse(DeserializationContextImpl.java:232) 
>>>
>>>         at 
>>> org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:546)
>>>         at org.apache.axis.Message.getSOAPEnvelope(Message.java:377)
>>>         at org.apache.axis.client.Call.invokeEngine(Call.java:2132)
>>>         at org.apache.axis.client.Call.invoke(Call.java:2102)
>>>         at org.apache.axis.client.Call.invoke(Call.java:1851)
>>>         at org.apache.axis.client.Call.invoke(Call.java:1777)
>>>         at org.apache.axis.client.Call.invoke(Call.java:1315)
>>>         at 
>>> uk.ac.ebi.www.Nucleic_PrimersEprimer3SoapBindingStub.runAndWaitFor(Nucleic_PrimersEprimer3SoapBindingStub.java:435) 
>>>
>>>         at mm_filters.Eprimer3.main(Eprimer3.java:162)
>>>
>>>
>>> _______________________________________________
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>>>     
>>
>>   
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