[EMBOSS] HELP!! ePrimer3 service down?

[Peter Schüffler]

Seems to work. No Error message, and normal output.

THANK YOU!!!




Mahmut Uludag wrote:
> Hi Peter,
>
>   
>> But for a while, the service doesn't work (but has worked before!).
>>     
>
> Can you please try running the service again? We recently moved the
> server to Soaplab-2 where we have some changes in the generic input
> maps. I have checked in a fix for this problem and updated the server
> and will later discuss this issue with Martin for a proper fix that
> might go into the soaplab-2 code base.
>
> Regards,
> Mahmut
>
>
>   
>> Here my source code and the failure message from Java.
>>
>> Do I something wrong, or does server something wrong?
>>
>> THANK YOU!!!
>>
>> Peter
>>
>>
>> public static void main(String[] args) {
>>         String seq = 
>> "TCTAGAAAAATTTTTTAAAAAATTAGGCCGCTCGAGCGAGAGTGCAGTGGCTCACGCCTGTAATCCAACA" +
>>                             
>> "CTTCAGGAGGCTGAAGAGGGTGGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAA";
>>
>>         try {
>>             // CONSTRUCT THE SERVICE
>>
>>             AnalysisServiceService service = new 
>> AnalysisServiceServiceLocator();
>>             Nucleic_PrimersEprimer3SoapBindingStub primer = 
>> (Nucleic_PrimersEprimer3SoapBindingStub) 
>> service.getNucleic_PrimersEprimer3();
>>            
>>             // SET UP THE PARAMETERS
>>             HashMap params = new HashMap();
>>             params.put("sequence_direct_data", seq);
>>             params.put("task", 1);
>>             params.put("numreturn", 100);
>>
>>             // RUN ePRIMER3
>>             HashMap result = primer.runAndWaitFor(params);
>>
>>             String output = (String) result.get("outfile");
>>             System.out.println(output);
>>
>>         } catch (RemoteException ex) {
>>             Logger.getLogger(Eprimer3.class.getName()).log(Level.SEVERE, 
>> null, ex);
>>         } catch (Exception ex) {
>>             Logger.getLogger(Eprimer3.class.getName()).log(Level.SEVERE, 
>> null, ex);
>>         }
>>     }
>>
>>
>>
>> HERE THE MESSAGE::
>>
>> Mar 28, 2008 11:24:07 AM mm_filters.Eprimer3 main
>> SEVERE: null
>> AxisFault
>>  faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
>>  faultString: java.lang.IllegalArgumentException: Conversion to 
>> SoaplabMap failed: Found an unsupported type 'java.lang.Integer'.
>>  faultActor: null
>>  faultDetail:
>>         hostname: web57-node1.ebi.ac.uk
>>
>> java.lang.IllegalArgumentException: Conversion to SoaplabMap failed: 
>> Found an unsupported type 'java.lang.Integer'.
>>         at 
>> org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:135)
>>         at 
>> org.apache.axis.encoding.DeserializationContextImpl.endElement(DeserializationContextImpl.java:942)
>>         at 
>> org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source)
>>         at 
>> org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown 
>> Source)
>>         at 
>> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown 
>> Source)
>>         at 
>> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown 
>> Source)
>>         at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
>>         at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
>>         at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
>>         at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
>>         at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
>>         at 
>> org.apache.axis.encoding.DeserializationContextImpl.parse(DeserializationContextImpl.java:232)
>>         at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:546)
>>         at org.apache.axis.Message.getSOAPEnvelope(Message.java:377)
>>         at org.apache.axis.client.Call.invokeEngine(Call.java:2132)
>>         at org.apache.axis.client.Call.invoke(Call.java:2102)
>>         at org.apache.axis.client.Call.invoke(Call.java:1851)
>>         at org.apache.axis.client.Call.invoke(Call.java:1777)
>>         at org.apache.axis.client.Call.invoke(Call.java:1315)
>>         at 
>> uk.ac.ebi.www.Nucleic_PrimersEprimer3SoapBindingStub.runAndWaitFor(Nucleic_PrimersEprimer3SoapBindingStub.java:435)
>>         at mm_filters.Eprimer3.main(Eprimer3.java:162)
>>
>>
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>>     
>
>