[EMBOSS] Antwort: request for a useful addition

[David.Bauer at SCHERING.DE]

This can be done with the option -sreverse1 or -sreverse2 to use the
reverse complement of the firts or second sequence used as input for e.g.
dottup. It is a standard option available to all emboss programs. You can
get a list of those options with -help -verbose.

David.

emboss-bounces at lists.open-bio.org schrieb am 25/01/2007 18:31:22:

> The program dottup (and other dotplot tools) takes the two sequence
given
> and displays a dotplot.  It would be useful if you could give it the
option
> to reverse complement one of the sequences then perform a dotplot.
>
> I was comparing a mRNA with a genomic sequence and wasn't seeing the
> similarity between the sequences.  Then I releazied I needed to rev-comp
the
> mRNA and it showed up fine.  Of course, one can do this using revseq,
but to
> have dottup do it for you would be even better.
>
> Ryan
>
>
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