[EMBOSS] Antwort: request for a useful addition

[Ryan Golhar]

Thanks.  I didn't see this in the list of options in 
EMBOSS-Explorer.  Luke, perhaps this can be added as an 
option to the interface?

Ryan


> > -----Original Message-----
> > From: David.Bauer at SCHERING.DE [mailto:David.Bauer at SCHERING.DE]
> > Sent: Friday, January 26, 2007 1:47 AM
> > To: golharam at umdnj.edu
> > Cc: emboss at lists.open-bio.org; emboss-bounces at lists.open-bio.org
> > Subject: Antwort: [EMBOSS] request for a useful addition
> > 
> > 
> > This can be done with the option -sreverse1 or -sreverse2 to
> > use the reverse complement of the firts or second sequence 
> > used as input for e.g. dottup. It is a standard option 
> > available to all emboss programs. You can get a list of those 
> > options with -help -verbose.
> > 
> > David.
> > 
> > emboss-bounces at lists.open-bio.org schrieb am 25/01/2007 18:31:22:
> > 
> > > The program dottup (and other dotplot tools) takes the 
> two sequence
> > given
> > > and displays a dotplot.  It would be useful if you could 
> give it the
> > option
> > > to reverse complement one of the sequences then perform a dotplot.
> > >
> > > I was comparing a mRNA with a genomic sequence and wasn't
> > seeing the
> > > similarity between the sequences.  Then I releazied I needed to
> > > rev-comp
> > the
> > > mRNA and it showed up fine.  Of course, one can do this
> > using revseq,
> > but to
> > > have dottup do it for you would be even better.
> > >
> > > Ryan
> > >
> > >
> > > _______________________________________________
> > > EMBOSS mailing list
> > > EMBOSS at lists.open-bio.org
> > > http://lists.open-bio.org/mailman/listinfo/emboss
> > 
> > 
> 
>