[EMBOSS] using emboss programs from spin] - Checked by AntiVirDEMO version

Ryan Golhar golharam at umdnj.edu
Tue Nov 7 03:57:56 UTC 2006

Take a look at the web site, http://emboss.sourceforge.net.  There are a
number of web interfaces available.  They all have different
strengths/weaknesses, so decide upon what it is you are looking for -
that should help you choose one.

> -----Original Message-----
> From: emboss-bounces at lists.open-bio.org 
> [mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Guy Bottu
> Sent: Sunday, November 05, 2006 2:16 PM
> To: Miguel Ortiz Lombardia
> Cc: emboss at emboss.open-bio.org
> Subject: Re: [EMBOSS] using emboss programs from spin] - 
> Checked by AntiVirDEMO version
> On Thu, Nov 02, 2006 at 09:00:20AM +0100, Miguel Ortiz 
> Lombardia wrote:
> > Here, a number of users are quite afraid of the command line ;-{ so 
> > they would appreciate a graphic interface to EMBOSS. We 
> tried Jemboss 
> > first, but got a number of problems that we couldn't solve 
> > (essentially with some results text files being corrupted). Then, I 
> > met with this interface from the Staden package, and found it very 
> > useful, to a certain extent.
> 	Dear Miguel,
> If you want a GUI for EMBOSS another possibility is wEMBOSS, 
> a Web interface with 
> the user data permanently stored at the side of the server. A 
> version that fully 
> supports EMBOSS 4 is just out (see http://wemboss.sourceforge.net).
> However, I consider that Staden spin remains useful. When I 
> personally have to do 
> some bioinformatic analysis with EMBOSS, I usually work at 
> the command line. But for 
> programs that produce an XY-graph I use spin, because it has 
> this nice feature of 
> displaying in one window a zoomable graph and in another 
> window the sequence, 
> allowing to see which detail of the graph corresponds to 
> which range of the 
> sequence.
> 	Regards,
> 	Guy Bottu,
> 	BEN
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