[EMBOSS] Error: Invalid graph value 'png'
Sumit Middha
smiddha at indiana.edu
Thu Nov 2 15:49:26 UTC 2006
> Hi,
>
> I used the command to make sure it finds and installs with png option
> ./configure --prefix=/bioportal/sw/encap/emboss-4.0.0
> --with-pngdriver=/local
>
> However, it still does not include png in the Graph type. Its a
> solaris machine I work on
>
> > uname -a
> SunOS helix 5.10 Generic_118833-22 sun4u sparc SUNW,Sun-Fire-480R
>
> > ls /local/lib/*png*
> /local/lib/libpng.a /local/lib/libpng12.a
> /local/lib/libpng.so /local/lib/libpng12.so
> /local/lib/libpng.so.3 /local/lib/libpng12.so.0
> /local/lib/libpng.so.3.1.2.7 /local/lib/libpng12.so.0.1.2.7
>
> > ls /local/include/*png*
> /local/include/png.h /local/include/pngconf.h
>
> /local/include/libpng:
> png.h pngconf.h
>
> /local/include/libpng12:
> png.h pngconf.h
>
> Can someone please suggest a way out ?
>
> Thanks,
> Sumit
> ------------------------------------------------------------------------
>
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
>
> It was created by configure, which was
> generated by GNU Autoconf 2.59. Invocation command line was
>
> $ ./configure --prefix=/bioportal/sw/encap/emboss-4.0.0 --with-pngdriver=/local
>
> ## --------- ##
> ## Platform. ##
> ## --------- ##
>
> hostname = helix
> uname -m = sun4u
> uname -r = 5.10
> uname -s = SunOS
> uname -v = Generic_118833-22
>
> /usr/bin/uname -p = sparc
> /bin/uname -X = System = SunOS
> Node = helix
> Release = 5.10
> KernelID = Generic_118833-22
> Machine = sun4u
> BusType = <unknown>
> Serial = <unknown>
> Users = <unknown>
> OEM# = 0
> Origin# = 1
> NumCPU = 4
>
> /bin/arch = sun4
> /usr/bin/arch -k = sun4u
> /usr/convex/getsysinfo = unknown
> hostinfo = unknown
> /bin/machine = unknown
> /usr/bin/oslevel = unknown
> /bin/universe = unknown
>
> PATH: /local/bin
> PATH: /bin
> PATH: /usr/bin
> PATH: /usr/ccs/bin
> PATH: /opt/SUNWspro/bin
> PATH: local/sbin
> PATH: /usr/sbin
> PATH: /sbin
> PATH: /local/bin
> PATH: /usr/bin
> PATH: /usr/ccs/bin
> PATH: /usr/openwin/bin
>
>
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
>
> configure:1557: checking for a BSD-compatible install
> configure:1612: result: /local/bin/install -c
> configure:1623: checking whether build environment is sane
> configure:1666: result: yes
> configure:1731: checking for gawk
> configure:1747: found /local/bin/gawk
> configure:1757: result: gawk
> configure:1767: checking whether make sets $(MAKE)
> configure:1787: result: yes
> configure:1961: checking for gawk
> configure:1987: result: gawk
> configure:2044: checking for gcc
> configure:2060: found /local/bin/gcc
> configure:2070: result: gcc
> configure:2314: checking for C compiler version
> configure:2317: gcc --version </dev/null >&5
> gcc (GCC) 3.4.4
> Copyright (C) 2004 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
> configure:2320: $? = 0
> configure:2322: gcc -v </dev/null >&5
> Reading specs from /local/encap/gcc-3.4.4/lib/gcc/sparc-sun-solaris2.10/3.4.4/specs
> Configured with: ./configure --prefix=/local/encap/gcc-3.4.4 --with-as=/usr/ccs/bin/as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-shared
> Thread model: posix
> gcc version 3.4.4
> configure:2325: $? = 0
> configure:2327: gcc -V </dev/null >&5
> gcc: `-V' option must have argument
> configure:2330: $? = 1
> configure:2353: checking for C compiler default output file name
> configure:2356: gcc conftest.c >&5
> configure:2359: $? = 0
> configure:2405: result: a.out
> configure:2410: checking whether the C compiler works
> configure:2416: ./a.out
> configure:2419: $? = 0
> configure:2436: result: yes
> configure:2443: checking whether we are cross compiling
> configure:2445: result: no
> configure:2448: checking for suffix of executables
> configure:2450: gcc -o conftest conftest.c >&5
> configure:2453: $? = 0
> configure:2478: result:
> configure:2484: checking for suffix of object files
> configure:2505: gcc -c conftest.c >&5
> configure:2508: $? = 0
> configure:2530: result: o
> configure:2534: checking whether we are using the GNU C compiler
> configure:2558: gcc -c conftest.c >&5
> configure:2564: $? = 0
> configure:2568: test -z
> || test ! -s conftest.err
> configure:2571: $? = 0
> configure:2574: test -s conftest.o
> configure:2577: $? = 0
> configure:2590: result: yes
> configure:2596: checking whether gcc accepts -g
> configure:2617: gcc -c -g conftest.c >&5
> configure:2623: $? = 0
> configure:2627: test -z
> || test ! -s conftest.err
> configure:2630: $? = 0
> configure:2633: test -s conftest.o
> configure:2636: $? = 0
> configure:2647: result: yes
> configure:2664: checking for gcc option to accept ANSI C
> configure:2734: gcc -c conftest.c >&5
> configure:2740: $? = 0
> configure:2744: test -z
> || test ! -s conftest.err
> configure:2747: $? = 0
> configure:2750: test -s conftest.o
> configure:2753: $? = 0
> configure:2771: result: none needed
> configure:2789: gcc -c conftest.c >&5
> conftest.c:2: error: syntax error before "me"
> configure:2795: $? = 1
> configure: failed program was:
> | #ifndef __cplusplus
> | choke me
> | #endif
> configure:2939: checking for style of include used by make
> configure:2967: result: GNU
> configure:2995: checking dependency style of gcc
> configure:3085: result: gcc3
> configure:3107: checking how to run the C preprocessor
> configure:3142: gcc -E conftest.c
> configure:3148: $? = 0
> configure:3180: gcc -E conftest.c
> conftest.c:11:28: ac_nonexistent.h: No such file or directory
> configure:3186: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:3225: result: gcc -E
> configure:3249: gcc -E conftest.c
> configure:3255: $? = 0
> configure:3287: gcc -E conftest.c
> conftest.c:11:28: ac_nonexistent.h: No such file or directory
> configure:3293: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:3596: checking build system type
> configure:3614: result: sparc-sun-solaris2.10
> configure:3622: checking host system type
> configure:3636: result: sparc-sun-solaris2.10
> configure:3644: checking for a sed that does not truncate output
> configure:3698: result: /local/bin/sed
> configure:3701: checking for egrep
> configure:3711: result: grep -E
> configure:3727: checking for ld used by gcc
> configure:3794: result: /usr/ccs/bin/ld
> configure:3803: checking if the linker (/usr/ccs/bin/ld) is GNU ld
> configure:3818: result: no
> configure:3823: checking for /usr/ccs/bin/ld option to reload object files
> configure:3830: result: -r
> configure:3848: checking for BSD-compatible nm
> configure:3897: result: /usr/ccs/bin/nm -p
> configure:3901: checking whether ln -s works
> configure:3905: result: yes
> configure:3912: checking how to recognise dependent libraries
> configure:4088: result: pass_all
> configure:4297: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4300: $? = 0
> configure:4321: checking for ANSI C header files
> configure:4346: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4352: $? = 0
> configure:4356: test -z
> || test ! -s conftest.err
> configure:4359: $? = 0
> configure:4362: test -s conftest.o
> configure:4365: $? = 0
> configure:4454: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4457: $? = 0
> configure:4459: ./conftest
> configure:4462: $? = 0
> configure:4477: result: yes
> configure:4501: checking for sys/types.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for sys/stat.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for stdlib.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for string.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for memory.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for strings.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for inttypes.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for stdint.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4501: checking for unistd.h
> configure:4517: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4523: $? = 0
> configure:4527: test -z
> || test ! -s conftest.err
> configure:4530: $? = 0
> configure:4533: test -s conftest.o
> configure:4536: $? = 0
> configure:4547: result: yes
> configure:4573: checking dlfcn.h usability
> configure:4585: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:4591: $? = 0
> configure:4595: test -z
> || test ! -s conftest.err
> configure:4598: $? = 0
> configure:4601: test -s conftest.o
> configure:4604: $? = 0
> configure:4614: result: yes
> configure:4618: checking dlfcn.h presence
> configure:4628: gcc -E conftest.c
> configure:4634: $? = 0
> configure:4654: result: yes
> configure:4689: checking for dlfcn.h
> configure:4696: result: yes
> configure:4761: checking for g++
> configure:4777: found /local/bin/g++
> configure:4787: result: g++
> configure:4803: checking for C++ compiler version
> configure:4806: g++ --version </dev/null >&5
> g++ (GCC) 3.4.4
> Copyright (C) 2004 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
> configure:4809: $? = 0
> configure:4811: g++ -v </dev/null >&5
> Reading specs from /local/encap/gcc-3.4.4/lib/gcc/sparc-sun-solaris2.10/3.4.4/specs
> Configured with: ./configure --prefix=/local/encap/gcc-3.4.4 --with-as=/usr/ccs/bin/as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-shared
> Thread model: posix
> gcc version 3.4.4
> configure:4814: $? = 0
> configure:4816: g++ -V </dev/null >&5
> g++: `-V' option must have argument
> configure:4819: $? = 1
> configure:4822: checking whether we are using the GNU C++ compiler
> configure:4846: g++ -c conftest.cc >&5
> configure:4852: $? = 0
> configure:4856: test -z
> || test ! -s conftest.err
> configure:4859: $? = 0
> configure:4862: test -s conftest.o
> configure:4865: $? = 0
> configure:4878: result: yes
> configure:4884: checking whether g++ accepts -g
> configure:4905: g++ -c -g conftest.cc >&5
> configure:4911: $? = 0
> configure:4915: test -z
> || test ! -s conftest.err
> configure:4918: $? = 0
> configure:4921: test -s conftest.o
> configure:4924: $? = 0
> configure:4935: result: yes
> configure:4977: g++ -c -g -O2 conftest.cc >&5
> configure:4983: $? = 0
> configure:4987: test -z
> || test ! -s conftest.err
> configure:4990: $? = 0
> configure:4993: test -s conftest.o
> configure:4996: $? = 0
> configure:5022: g++ -c -g -O2 conftest.cc >&5
> conftest.cc: In function `int main()':
> conftest.cc:26: error: `exit' undeclared (first use this function)
> conftest.cc:26: error: (Each undeclared identifier is reported only once for each function it appears in.)
> configure:5028: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | /* end confdefs.h. */
> |
> | int
> | main ()
> | {
> | exit (42);
> | ;
> | return 0;
> | }
> configure:4977: g++ -c -g -O2 conftest.cc >&5
> configure:4983: $? = 0
> configure:4987: test -z
> || test ! -s conftest.err
> configure:4990: $? = 0
> configure:4993: test -s conftest.o
> configure:4996: $? = 0
> configure:5022: g++ -c -g -O2 conftest.cc >&5
> configure:5028: $? = 0
> configure:5032: test -z
> || test ! -s conftest.err
> configure:5035: $? = 0
> configure:5038: test -s conftest.o
> configure:5041: $? = 0
> configure:5066: checking dependency style of g++
> configure:5156: result: gcc3
> configure:5183: checking how to run the C++ preprocessor
> configure:5214: g++ -E conftest.cc
> configure:5220: $? = 0
> configure:5252: g++ -E conftest.cc
> conftest.cc:25:28: ac_nonexistent.h: No such file or directory
> configure:5258: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:5297: result: g++ -E
> configure:5321: g++ -E conftest.cc
> configure:5327: $? = 0
> configure:5359: g++ -E conftest.cc
> conftest.cc:25:28: ac_nonexistent.h: No such file or directory
> configure:5365: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:5462: checking for g77
> configure:5478: found /local/bin/g77
> configure:5488: result: g77
> configure:5503: checking for Fortran 77 compiler version
> configure:5506: g77 --version </dev/null >&5
> GNU Fortran (GCC) 3.4.4
> Copyright (C) 2004 Free Software Foundation, Inc.
>
> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
> You may redistribute copies of GNU Fortran
> under the terms of the GNU General Public License.
> For more information about these matters, see the file named COPYING
> or type the command `info -f g77 Copying'.
> configure:5509: $? = 0
> configure:5511: g77 -v </dev/null >&5
> Reading specs from /local/encap/gcc-3.4.4/lib/gcc/sparc-sun-solaris2.10/3.4.4/specs
> Configured with: ./configure --prefix=/local/encap/gcc-3.4.4 --with-as=/usr/ccs/bin/as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-shared
> Thread model: posix
> gcc version 3.4.4
> configure:5514: $? = 0
> configure:5516: g77 -V </dev/null >&5
> g77: `-V' option must have argument
> configure:5519: $? = 1
> configure:5527: checking whether we are using the GNU Fortran 77 compiler
> configure:5541: g77 -c conftest.F >&5
> configure:5547: $? = 0
> configure:5551: test -z
> || test ! -s conftest.err
> configure:5554: $? = 0
> configure:5557: test -s conftest.o
> configure:5560: $? = 0
> configure:5573: result: yes
> configure:5579: checking whether g77 accepts -g
> configure:5591: g77 -c -g conftest.f >&5
> configure:5597: $? = 0
> configure:5601: test -z
> || test ! -s conftest.err
> configure:5604: $? = 0
> configure:5607: test -s conftest.o
> configure:5610: $? = 0
> configure:5622: result: yes
> configure:5652: checking the maximum length of command line arguments
> configure:5761: result: 262144
> configure:5772: checking command to parse /usr/ccs/bin/nm -p output from gcc object
> configure:5877: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:5880: $? = 0
> configure:5884: /usr/ccs/bin/nm -p conftest.o \| sed -n -e 's/^.*[ ]\([BDRT][BDRT]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
> configure:5887: $? = 0
> configure:5939: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c conftstm.o >&5
> configure:5942: $? = 0
> configure:5980: result: ok
> configure:5984: checking for objdir
> configure:5999: result: .libs
> configure:6089: checking for ar
> configure:6105: found /usr/ccs/bin/ar
> configure:6116: result: ar
> configure:6169: checking for ranlib
> configure:6185: found /usr/ccs/bin/ranlib
> configure:6196: result: ranlib
> configure:6249: checking for strip
> configure:6265: found /usr/ccs/bin/strip
> configure:6276: result: strip
> configure:6548: checking if gcc supports -fno-rtti -fno-exceptions
> configure:6566: gcc -c -O2 -D__EXTENSIONS__ -fno-rtti -fno-exceptions conftest.c >&5
> cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
> configure:6570: $? = 0
> configure:6583: result: no
> configure:6598: checking for gcc option to produce PIC
> configure:6808: result: -fPIC
> configure:6816: checking if gcc PIC flag -fPIC works
> configure:6834: gcc -c -O2 -D__EXTENSIONS__ -fPIC -DPIC conftest.c >&5
> configure:6838: $? = 0
> configure:6851: result: yes
> configure:6879: checking if gcc static flag -static works
> configure:6907: result: no
> configure:6917: checking if gcc supports -c -o file.o
> configure:6938: gcc -c -O2 -D__EXTENSIONS__ -o out/conftest2.o conftest.c >&5
> configure:6942: $? = 0
> configure:6964: result: yes
> configure:6990: checking whether the gcc linker (/usr/ccs/bin/ld) supports shared libraries
> configure:7948: result: yes
> configure:7969: checking whether -lc should be explicitly linked in
> configure:7974: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:7977: $? = 0
> configure:7992: gcc -shared -Wl,-h -Wl,conftest -o conftest conftest.o -v 2\>\&1 \| grep -lc \>/dev/null 2\>\&1
> configure:7995: $? = 1
> configure:8007: result: yes
> configure:8015: checking dynamic linker characteristics
> configure:8624: result: solaris2.10 ld.so
> configure:8633: checking how to hardcode library paths into programs
> configure:8658: result: immediate
> configure:8672: checking whether stripping libraries is possible
> configure:8693: result: no
> configure:9511: checking if libtool supports shared libraries
> configure:9513: result: yes
> configure:9516: checking whether to build shared libraries
> configure:9537: result: yes
> configure:9540: checking whether to build static libraries
> configure:9544: result: yes
> configure:9636: creating libtool
> configure:10224: checking for ld used by g++
> configure:10291: result: /usr/ccs/bin/ld
> configure:10300: checking if the linker (/usr/ccs/bin/ld) is GNU ld
> configure:10315: result: no
> configure:10366: checking whether the g++ linker (/usr/ccs/bin/ld) supports shared libraries
> configure:11304: result: yes
> configure:11322: g++ -c -g -O2 conftest.cpp >&5
> configure:11325: $? = 0
> configure:11444: checking for g++ option to produce PIC
> configure:11718: result: -fPIC
> configure:11726: checking if g++ PIC flag -fPIC works
> configure:11744: g++ -c -g -O2 -fPIC -DPIC conftest.cpp >&5
> configure:11748: $? = 0
> configure:11761: result: yes
> configure:11789: checking if g++ static flag -static works
> configure:11817: result: no
> configure:11827: checking if g++ supports -c -o file.o
> configure:11848: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
> configure:11852: $? = 0
> configure:11874: result: yes
> configure:11900: checking whether the g++ linker (/usr/ccs/bin/ld) supports shared libraries
> configure:11925: result: yes
> configure:11992: checking dynamic linker characteristics
> configure:12601: result: solaris2.10 ld.so
> configure:12610: checking how to hardcode library paths into programs
> configure:12635: result: immediate
> configure:13161: checking if libtool supports shared libraries
> configure:13163: result: yes
> configure:13166: checking whether to build shared libraries
> configure:13186: result: yes
> configure:13189: checking whether to build static libraries
> configure:13193: result: yes
> configure:13203: checking for g77 option to produce PIC
> configure:13413: result: -fPIC
> configure:13421: checking if g77 PIC flag -fPIC works
> configure:13439: g77 -c -g -O2 -fPIC conftest.f >&5
> configure:13443: $? = 0
> configure:13456: result: yes
> configure:13484: checking if g77 static flag -static works
> configure:13512: result: no
> configure:13522: checking if g77 supports -c -o file.o
> configure:13543: g77 -c -g -O2 -o out/conftest2.o conftest.f >&5
> configure:13547: $? = 0
> configure:13569: result: yes
> configure:13595: checking whether the g77 linker (/usr/ccs/bin/ld) supports shared libraries
> configure:14533: result: yes
> configure:14600: checking dynamic linker characteristics
> configure:15209: result: solaris2.10 ld.so
> configure:15218: checking how to hardcode library paths into programs
> configure:15243: result: immediate
> configure:18828: checking whether byte ordering is bigendian
> configure:18855: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5
> conftest.c: In function `main':
> conftest.c:32: error: `bogus' undeclared (first use in this function)
> conftest.c:32: error: (Each undeclared identifier is reported only once
> conftest.c:32: error: for each function it appears in.)
> conftest.c:32: error: syntax error before "endian"
> configure:18861: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | #include <sys/types.h>
> | #include <sys/param.h>
> |
> | int
> | main ()
> | {
> | #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN
> | bogus endian macros
> | #endif
> |
> | ;
> | return 0;
> | }
> configure:19015: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5
> configure:19018: $? = 0
> configure:19020: ./conftest
> configure:19023: $? = 1
> configure: program exited with status 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | int
> | main ()
> | {
> | /* Are we little or big endian? From Harbison&Steele. */
> | union
> | {
> | long l;
> | char c[sizeof (long)];
> | } u;
> | u.l = 1;
> | exit (u.c[sizeof (long) - 1] == 1);
> | }
> configure:19039: result: yes
> configure:19089: checking for a BSD-compatible install
> configure:19144: result: /local/bin/install -c
> configure:19155: checking whether ln -s works
> configure:19159: result: yes
> configure:19166: checking whether make sets $(MAKE)
> configure:19186: result: yes
> configure:19236: checking for ranlib
> configure:19263: result: ranlib
> configure:19276: checking for X
> configure:19381: gcc -E -DBENDIAN conftest.c
> configure:19387: $? = 0
> configure:19437: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -lXt >&5
> Undefined first referenced
> symbol in file
> XrmInitialize /var/tmp//ccIjdzQL.o (symbol belongs to implicit dependency /usr/openwin/lib/libX11.so.4)
> ld: fatal: Symbol referencing errors. No output written to conftest
> collect2: ld returned 1 exit status
> configure:19443: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | #include <X11/Xlib.h>
> | int
> | main ()
> | {
> | XrmInitialize ()
> | ;
> | return 0;
> | }
> configure:19506: result: libraries /usr/lib, headers
> configure:19530: checking whether -R must be followed by a space
> configure:19549: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -R/usr/lib >&5
> configure:19555: $? = 0
> configure:19559: test -z
> || test ! -s conftest.err
> configure:19562: $? = 0
> configure:19565: test -s conftest
> configure:19568: $? = 0
> configure:19580: result: no
> configure:19678: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -L/usr/lib -R/usr/lib -lX11 >&5
> configure:19684: $? = 0
> configure:19688: test -z
> || test ! -s conftest.err
> configure:19691: $? = 0
> configure:19694: test -s conftest
> configure:19697: $? = 0
> configure:19855: checking for gethostbyname
> configure:19912: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> Undefined first referenced
> symbol in file
> gethostbyname /var/tmp//ccy7pKHR.o
> ld: fatal: Symbol referencing errors. No output written to conftest
> collect2: ld returned 1 exit status
> configure:19918: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | /* Define gethostbyname to an innocuous variant, in case <limits.h> declares gethostbyname.
> | For example, HP-UX 11i <limits.h> declares gettimeofday. */
> | #define gethostbyname innocuous_gethostbyname
> |
> | /* System header to define __stub macros and hopefully few prototypes,
> | which can conflict with char gethostbyname (); below.
> | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> | <limits.h> exists even on freestanding compilers. */
> |
> | #ifdef __STDC__
> | # include <limits.h>
> | #else
> | # include <assert.h>
> | #endif
> |
> | #undef gethostbyname
> |
> | /* Override any gcc2 internal prototype to avoid an error. */
> | #ifdef __cplusplus
> | extern "C"
> | {
> | #endif
> | /* We use char because int might match the return type of a gcc2
> | builtin and then its argument prototype would still apply. */
> | char gethostbyname ();
> | /* The GNU C library defines this for functions which it implements
> | to always fail with ENOSYS. Some functions are actually named
> | something starting with __ and the normal name is an alias. */
> | #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
> | choke me
> | #else
> | char (*f) () = gethostbyname;
> | #endif
> | #ifdef __cplusplus
> | }
> | #endif
> |
> | int
> | main ()
> | {
> | return f != gethostbyname;
> | ;
> | return 0;
> | }
> configure:19943: result: no
> configure:19947: checking for gethostbyname in -lnsl
> configure:19977: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -lnsl >&5
> configure:19983: $? = 0
> configure:19987: test -z
> || test ! -s conftest.err
> configure:19990: $? = 0
> configure:19993: test -s conftest
> configure:19996: $? = 0
> configure:20009: result: yes
> configure:20094: checking for connect
> configure:20151: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> Undefined first referenced
> symbol in file
> connect /var/tmp//cc2mi2rV.o
> ld: fatal: Symbol referencing errors. No output written to conftest
> collect2: ld returned 1 exit status
> configure:20157: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h. */
> | /* Define connect to an innocuous variant, in case <limits.h> declares connect.
> | For example, HP-UX 11i <limits.h> declares gettimeofday. */
> | #define connect innocuous_connect
> |
> | /* System header to define __stub macros and hopefully few prototypes,
> | which can conflict with char connect (); below.
> | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> | <limits.h> exists even on freestanding compilers. */
> |
> | #ifdef __STDC__
> | # include <limits.h>
> | #else
> | # include <assert.h>
> | #endif
> |
> | #undef connect
> |
> | /* Override any gcc2 internal prototype to avoid an error. */
> | #ifdef __cplusplus
> | extern "C"
> | {
> | #endif
> | /* We use char because int might match the return type of a gcc2
> | builtin and then its argument prototype would still apply. */
> | char connect ();
> | /* The GNU C library defines this for functions which it implements
> | to always fail with ENOSYS. Some functions are actually named
> | something starting with __ and the normal name is an alias. */
> | #if defined (__stub_connect) || defined (__stub___connect)
> | choke me
> | #else
> | char (*f) () = connect;
> | #endif
> | #ifdef __cplusplus
> | }
> | #endif
> |
> | int
> | main ()
> | {
> | return f != connect;
> | ;
> | return 0;
> | }
> configure:20182: result: no
> configure:20186: checking for connect in -lsocket
> configure:20216: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -lsocket -lnsl >&5
> configure:20222: $? = 0
> configure:20226: test -z
> || test ! -s conftest.err
> configure:20229: $? = 0
> configure:20232: test -s conftest
> configure:20235: $? = 0
> configure:20248: result: yes
> configure:20257: checking for remove
> configure:20314: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:20320: $? = 0
> configure:20324: test -z
> || test ! -s conftest.err
> configure:20327: $? = 0
> configure:20330: test -s conftest
> configure:20333: $? = 0
> configure:20345: result: yes
> configure:20420: checking for shmat
> configure:20477: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:20483: $? = 0
> configure:20487: test -z
> || test ! -s conftest.err
> configure:20490: $? = 0
> configure:20493: test -s conftest
> configure:20496: $? = 0
> configure:20508: result: yes
> configure:20592: checking for IceConnectionNumber in -lICE
> configure:20622: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN -L/usr/lib conftest.c -lICE -lsocket -lnsl >&5
> configure:20628: $? = 0
> configure:20632: test -z
> || test ! -s conftest.err
> configure:20635: $? = 0
> configure:20638: test -s conftest
> configure:20641: $? = 0
> configure:20654: result: yes
> configure:20672: checking for dirent.h that defines DIR
> configure:20696: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:20702: $? = 0
> configure:20706: test -z
> || test ! -s conftest.err
> configure:20709: $? = 0
> configure:20712: test -s conftest.o
> configure:20715: $? = 0
> configure:20726: result: yes
> configure:20739: checking for library containing opendir
> configure:20769: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:20775: $? = 0
> configure:20779: test -z
> || test ! -s conftest.err
> configure:20782: $? = 0
> configure:20785: test -s conftest
> configure:20788: $? = 0
> configure:20858: result: none required
> configure:20994: checking for ANSI C header files
> configure:21150: result: yes
> configure:21166: checking for unistd.h
> configure:21171: result: yes
> configure:21312: checking for an ANSI C-conforming const
> configure:21379: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:21385: $? = 0
> configure:21389: test -z
> || test ! -s conftest.err
> configure:21392: $? = 0
> configure:21395: test -s conftest.o
> configure:21398: $? = 0
> configure:21409: result: yes
> configure:21419: checking for pid_t
> configure:21443: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:21449: $? = 0
> configure:21453: test -z
> || test ! -s conftest.err
> configure:21456: $? = 0
> configure:21459: test -s conftest.o
> configure:21462: $? = 0
> configure:21473: result: yes
> configure:21485: checking for size_t
> configure:21509: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:21515: $? = 0
> configure:21519: test -z
> || test ! -s conftest.err
> configure:21522: $? = 0
> configure:21525: test -s conftest.o
> configure:21528: $? = 0
> configure:21539: result: yes
> configure:21551: checking whether struct tm is in sys/time.h or time.h
> configure:21574: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:21580: $? = 0
> configure:21584: test -z
> || test ! -s conftest.err
> configure:21587: $? = 0
> configure:21590: test -s conftest.o
> configure:21593: $? = 0
> configure:21604: result: time.h
> configure:21615: checking whether getpgrp requires zero arguments
> configure:21637: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> conftest.c: In function `main':
> conftest.c:65: error: too many arguments to function `getpgrp'
> configure:21643: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | #define HAVE_DIRENT_H 1
> | #define STDC_HEADERS 1
> | #define HAVE_UNISTD_H 1
> | /* end confdefs.h. */
> | #include <stdio.h>
> | #if HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #if HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #if STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # if HAVE_STDLIB_H
> | # include <stdlib.h>
> | # endif
> | #endif
> | #if HAVE_STRING_H
> | # if !STDC_HEADERS && HAVE_MEMORY_H
> | # include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #if HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #if HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #else
> | # if HAVE_STDINT_H
> | # include <stdint.h>
> | # endif
> | #endif
> | #if HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | int
> | main ()
> | {
> | getpgrp (0);
> | ;
> | return 0;
> | }
> configure:21668: result: yes
> configure:21682: checking for strftime
> configure:21739: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> conftest.c:53: warning: conflicting types for built-in function 'strftime'
> configure:21745: $? = 0
> configure:21749: test -z
> || test ! -s conftest.err
> configure:21752: $? = 0
> configure:21755: test -s conftest
> configure:21758: $? = 0
> configure:21770: result: yes
> configure:21860: checking for unistd.h
> configure:21865: result: yes
> configure:21869: checking vfork.h usability
> configure:21881: gcc -c -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> conftest.c:65:19: vfork.h: No such file or directory
> configure:21887: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | #define HAVE_DIRENT_H 1
> | #define STDC_HEADERS 1
> | #define HAVE_UNISTD_H 1
> | #define GETPGRP_VOID 1
> | #define HAVE_STRFTIME 1
> | #define HAVE_UNISTD_H 1
> | /* end confdefs.h. */
> | #include <stdio.h>
> | #if HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #if HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #if STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # if HAVE_STDLIB_H
> | # include <stdlib.h>
> | # endif
> | #endif
> | #if HAVE_STRING_H
> | # if !STDC_HEADERS && HAVE_MEMORY_H
> | # include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #if HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #if HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #else
> | # if HAVE_STDINT_H
> | # include <stdint.h>
> | # endif
> | #endif
> | #if HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | #include <vfork.h>
> configure:21910: result: no
> configure:21914: checking vfork.h presence
> configure:21924: gcc -E -DBENDIAN conftest.c
> conftest.c:31:19: vfork.h: No such file or directory
> configure:21930: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | #define HAVE_DIRENT_H 1
> | #define STDC_HEADERS 1
> | #define HAVE_UNISTD_H 1
> | #define GETPGRP_VOID 1
> | #define HAVE_STRFTIME 1
> | #define HAVE_UNISTD_H 1
> | /* end confdefs.h. */
> | #include <vfork.h>
> configure:21950: result: no
> configure:21985: checking for vfork.h
> configure:21992: result: no
> configure:22010: checking for fork
> configure:22067: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:22073: $? = 0
> configure:22077: test -z
> || test ! -s conftest.err
> configure:22080: $? = 0
> configure:22083: test -s conftest
> configure:22086: $? = 0
> configure:22098: result: yes
> configure:22010: checking for vfork
> configure:22067: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:22073: $? = 0
> configure:22077: test -z
> || test ! -s conftest.err
> configure:22080: $? = 0
> configure:22083: test -s conftest
> configure:22086: $? = 0
> configure:22098: result: yes
> configure:22109: checking for working fork
> configure:22132: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:22135: $? = 0
> configure:22137: ./conftest
> configure:22140: $? = 0
> configure:22154: result: yes
> configure:22175: checking for working vfork
> configure:22308: result: yes
> configure:22343: checking for vprintf
> configure:22400: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> conftest.c:59: warning: conflicting types for built-in function 'vprintf'
> configure:22406: $? = 0
> configure:22410: test -z
> || test ! -s conftest.err
> configure:22413: $? = 0
> configure:22416: test -s conftest
> configure:22419: $? = 0
> configure:22431: result: yes
> configure:22438: checking for _doprnt
> configure:22495: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> configure:22501: $? = 0
> configure:22505: test -z
> || test ! -s conftest.err
> configure:22508: $? = 0
> configure:22511: test -s conftest
> configure:22514: $? = 0
> configure:22526: result: yes
> configure:22545: checking for memmove
> configure:22602: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c >&5
> conftest.c:61: warning: conflicting types for built-in function 'memmove'
> configure:22608: $? = 0
> configure:22612: test -z
> || test ! -s conftest.err
> configure:22615: $? = 0
> configure:22618: test -s conftest
> configure:22621: $? = 0
> configure:22633: result: yes
> configure:22652: checking for gethostbyname in -lc
> configure:22682: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -lc >&5
> Undefined first referenced
> symbol in file
> gethostbyname /var/tmp//ccSBeEVg.o
> ld: fatal: Symbol referencing errors. No output written to conftest
> collect2: ld returned 1 exit status
> configure:22688: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | #define HAVE_DIRENT_H 1
> | #define STDC_HEADERS 1
> | #define HAVE_UNISTD_H 1
> | #define GETPGRP_VOID 1
> | #define HAVE_STRFTIME 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_FORK 1
> | #define HAVE_VFORK 1
> | #define HAVE_WORKING_VFORK 1
> | #define HAVE_WORKING_FORK 1
> | #define HAVE_VPRINTF 1
> | #define HAVE_DOPRNT 1
> | #define HAVE_MEMMOVE 1
> | /* end confdefs.h. */
> |
> | /* Override any gcc2 internal prototype to avoid an error. */
> | #ifdef __cplusplus
> | extern "C"
> | #endif
> | /* We use char because int might match the return type of a gcc2
> | builtin and then its argument prototype would still apply. */
> | char gethostbyname ();
> | int
> | main ()
> | {
> | gethostbyname ();
> | ;
> | return 0;
> | }
> configure:22714: result: no
> configure:22722: checking for socket in -lc
> configure:22752: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -lc -lnsl >&5
> Undefined first referenced
> symbol in file
> socket /var/tmp//cc6qIEXF.o
> ld: fatal: Symbol referencing errors. No output written to conftest
> collect2: ld returned 1 exit status
> configure:22758: $? = 1
> configure: failed program was:
> | /* confdefs.h. */
> |
> | #define PACKAGE_NAME ""
> | #define PACKAGE_TARNAME ""
> | #define PACKAGE_VERSION ""
> | #define PACKAGE_STRING ""
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "EMBOSS"
> | #define VERSION "4.0.0"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | #define HAVE_DIRENT_H 1
> | #define STDC_HEADERS 1
> | #define HAVE_UNISTD_H 1
> | #define GETPGRP_VOID 1
> | #define HAVE_STRFTIME 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_FORK 1
> | #define HAVE_VFORK 1
> | #define HAVE_WORKING_VFORK 1
> | #define HAVE_WORKING_FORK 1
> | #define HAVE_VPRINTF 1
> | #define HAVE_DOPRNT 1
> | #define HAVE_MEMMOVE 1
> | /* end confdefs.h. */
> |
> | /* Override any gcc2 internal prototype to avoid an error. */
> | #ifdef __cplusplus
> | extern "C"
> | #endif
> | /* We use char because int might match the return type of a gcc2
> | builtin and then its argument prototype would still apply. */
> | char socket ();
> | int
> | main ()
> | {
> | socket ();
> | ;
> | return 0;
> | }
> configure:22784: result: no
> configure:22793: checking for main in -lm
> configure:22817: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN conftest.c -lm -lnsl -lsocket >&5
> configure:22823: $? = 0
> configure:22827: test -z
> || test ! -s conftest.err
> configure:22830: $? = 0
> configure:22833: test -s conftest
> configure:22836: $? = 0
> configure:22849: result: yes
> configure:22942: checking if docroot is given
> configure:22955: result: no
> configure:22963: checking if gcc profiling is selected
> configure:22977: result: no
> configure:22987: checking if java include directory given
> configure:23057: result: no
> configure:23072: checking if java OS include directory given
> configure:23094: result: no
> configure:23113: checking if png driver is wanted
> configure:23120: result: yes
> configure:23156: checking for libiconv_close in -liconv
> configure:23186: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN -I/local/include -L/local/lib conftest.c -liconv -L/local/lib -liconv -lm -lnsl -lsocket >&5
> configure:23192: $? = 0
> configure:23196: test -z
> || test ! -s conftest.err
> configure:23199: $? = 0
> configure:23202: test -s conftest
> configure:23205: $? = 0
> configure:23218: result: yes
> configure:23239: checking for inflateEnd in -lz
> configure:23269: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN -I/local/include -L/local/lib -L/local/lib -liconv -R/local/lib conftest.c -lz -L/local/lib -lz -lm -lnsl -lsocket >&5
> configure:23275: $? = 0
> configure:23279: test -z
> || test ! -s conftest.err
> configure:23282: $? = 0
> configure:23285: test -s conftest
> configure:23288: $? = 0
> configure:23301: result: yes
> configure:23315: checking for png_destroy_read_struct in -lpng
> configure:23345: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN -I/local/include -L/local/lib -L/local/lib -liconv -R/local/lib conftest.c -lpng -L/local/lib -lz -lm -lnsl -lsocket >&5
> configure:23351: $? = 0
> configure:23355: test -z
> || test ! -s conftest.err
> configure:23358: $? = 0
> configure:23361: test -s conftest
> configure:23364: $? = 0
> configure:23377: result: yes
> configure:23394: checking for gdImageCreateFromPng in -lgd
> configure:23424: gcc -o conftest -O2 -D__EXTENSIONS__ -DBENDIAN -I/local/include -L/local/lib -L/local/lib -liconv -R/local/lib conftest.c -lgd -L/local/lib -lgd -lpng -lz -lm -lm -lnsl -lsocket >&5
> configure:23430: $? = 0
> configure:23434: test -z
> || test ! -s conftest.err
> configure:23437: $? = 0
> configure:23440: test -s conftest
> configure:23443: $? = 0
> configure:23456: result: yes
> configure:23536: checking if any authorisation type is given
> configure:23708: result: no
> configure:23729: checking for gdome2
> configure:23747: result: no
> configure:23756: checking if Linux x86_64
> configure:23770: result: no
> configure:23831: checking for large file support
> configure:23866: result: done
> configure:23883: checking for purify
> configure:23897: result: no
> configure:24011: checking if any threading type is given
> configure:24077: result: no
> configure:24288: creating ./config.status
>
> ## ---------------------- ##
> ## Running config.status. ##
> ## ---------------------- ##
>
> This file was extended by config.status, which was
> generated by GNU Autoconf 2.59. Invocation command line was
>
> CONFIG_FILES =
> CONFIG_HEADERS =
> CONFIG_LINKS =
> CONFIG_COMMANDS =
> $ ./config.status
>
> on helix
>
> config.status:801: creating plplot/Makefile
> config.status:801: creating plplot/lib/Makefile
> config.status:801: creating nucleus/Makefile
> config.status:801: creating ajax/Makefile
> config.status:801: creating emboss/Makefile
> config.status:801: creating emboss/acd/Makefile
> config.status:801: creating test/Makefile
> config.status:801: creating test/data/Makefile
> config.status:801: creating test/embl/Makefile
> config.status:801: creating test/genbank/Makefile
> config.status:801: creating test/gb/Makefile
> config.status:801: creating test/pir/Makefile
> config.status:801: creating test/swiss/Makefile
> config.status:801: creating test/swnew/Makefile
> config.status:801: creating test/wormpep/Makefile
> config.status:801: creating emboss/data/Makefile
> config.status:801: creating emboss/data/AAINDEX/Makefile
> config.status:801: creating emboss/data/CODONS/Makefile
> config.status:801: creating emboss/data/REBASE/Makefile
> config.status:801: creating emboss/data/PRINTS/Makefile
> config.status:801: creating emboss/data/PROSITE/Makefile
> config.status:801: creating doc/Makefile
> config.status:801: creating doc/manuals/Makefile
> config.status:801: creating doc/tutorials/Makefile
> config.status:801: creating doc/programs/Makefile
> config.status:801: creating doc/programs/html/Makefile
> config.status:801: creating doc/programs/text/Makefile
> config.status:801: creating jemboss/Makefile
> config.status:801: creating jemboss/api/Makefile
> config.status:801: creating jemboss/api/org/Makefile
> config.status:801: creating jemboss/api/org/emboss/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/gui/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/gui/filetree/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/gui/form/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/gui/startup/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/parser/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/parser/acd/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/programs/Makefile
> config.status:801: creating jemboss/api/org/emboss/jemboss/soap/Makefile
> config.status:801: creating jemboss/images/Makefile
> config.status:801: creating jemboss/lib/Makefile
> config.status:801: creating jemboss/lib/axis/Makefile
> config.status:801: creating jemboss/org/Makefile
> config.status:801: creating jemboss/org/emboss/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/graphics/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/gui/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/gui/filetree/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/gui/form/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/gui/startup/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/parser/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/parser/acd/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/programs/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/server/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/soap/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/editor/Makefile
> config.status:801: creating jemboss/org/emboss/jemboss/draw/Makefile
> config.status:801: creating jemboss/resources/Makefile
> config.status:801: creating jemboss/utils/Makefile
> config.status:801: creating Makefile
> config.status:984: executing depfiles commands
>
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
>
> ac_cv_build=sparc-sun-solaris2.10
> ac_cv_build_alias=sparc-sun-solaris2.10
> ac_cv_c_bigendian=yes
> ac_cv_c_compiler_gnu=yes
> ac_cv_c_const=yes
> ac_cv_cxx_compiler_gnu=yes
> ac_cv_env_CC_set=
> ac_cv_env_CC_value=
> ac_cv_env_CFLAGS_set=
> ac_cv_env_CFLAGS_value=
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_CXXCPP_set=
> ac_cv_env_CXXCPP_value=
> ac_cv_env_CXXFLAGS_set=
> ac_cv_env_CXXFLAGS_value=
> ac_cv_env_CXX_set=
> ac_cv_env_CXX_value=
> ac_cv_env_F77_set=
> ac_cv_env_F77_value=
> ac_cv_env_FFLAGS_set=
> ac_cv_env_FFLAGS_value=
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_exeext=
> ac_cv_f77_compiler_gnu=yes
> ac_cv_func__doprnt=yes
> ac_cv_func_connect=no
> ac_cv_func_fork=yes
> ac_cv_func_fork_works=yes
> ac_cv_func_gethostbyname=no
> ac_cv_func_getpgrp_void=yes
> ac_cv_func_memmove=yes
> ac_cv_func_remove=yes
> ac_cv_func_shmat=yes
> ac_cv_func_strftime=yes
> ac_cv_func_vfork=yes
> ac_cv_func_vfork_works=yes
> ac_cv_func_vprintf=yes
> ac_cv_have_x='have_x=yes ac_x_includes= ac_x_libraries=/usr/lib'
> ac_cv_header_dirent_dirent_h=yes
> ac_cv_header_dlfcn_h=yes
> ac_cv_header_inttypes_h=yes
> ac_cv_header_memory_h=yes
> ac_cv_header_stdc=yes
> ac_cv_header_stdint_h=yes
> ac_cv_header_stdlib_h=yes
> ac_cv_header_string_h=yes
> ac_cv_header_strings_h=yes
> ac_cv_header_sys_stat_h=yes
> ac_cv_header_sys_types_h=yes
> ac_cv_header_unistd_h=yes
> ac_cv_header_vfork_h=no
> ac_cv_host=sparc-sun-solaris2.10
> ac_cv_host_alias=sparc-sun-solaris2.10
> ac_cv_lib_ICE_IceConnectionNumber=yes
> ac_cv_lib_c_gethostbyname=no
> ac_cv_lib_c_socket=no
> ac_cv_lib_gd_gdImageCreateFromPng=yes
> ac_cv_lib_iconv_libiconv_close=yes
> ac_cv_lib_m_main=yes
> ac_cv_lib_nsl_gethostbyname=yes
> ac_cv_lib_png_png_destroy_read_struct=yes
> ac_cv_lib_socket_connect=yes
> ac_cv_lib_z_inflateEnd=yes
> ac_cv_objext=o
> ac_cv_path_install='/local/bin/install -c'
> ac_cv_prog_AWK=gawk
> ac_cv_prog_CPP='gcc -E'
> ac_cv_prog_CXXCPP='g++ -E'
> ac_cv_prog_ac_ct_AR=ar
> ac_cv_prog_ac_ct_CC=gcc
> ac_cv_prog_ac_ct_CXX=g++
> ac_cv_prog_ac_ct_F77=g77
> ac_cv_prog_ac_ct_RANLIB=ranlib
> ac_cv_prog_ac_ct_STRIP=strip
> ac_cv_prog_cc_g=yes
> ac_cv_prog_cc_stdc=
> ac_cv_prog_cxx_g=yes
> ac_cv_prog_egrep='grep -E'
> ac_cv_prog_f77_g=yes
> ac_cv_prog_make_make_set=yes
> ac_cv_search_opendir='none required'
> ac_cv_struct_tm=time.h
> ac_cv_type_pid_t=yes
> ac_cv_type_size_t=yes
> am_cv_CC_dependencies_compiler_type=gcc3
> am_cv_CXX_dependencies_compiler_type=gcc3
> lt_cv_deplibs_check_method=pass_all
> lt_cv_file_magic_cmd='$MAGIC_CMD'
> lt_cv_file_magic_test_file=
> lt_cv_ld_reload_flag=-r
> lt_cv_objdir=.libs
> lt_cv_path_LD=/usr/ccs/bin/ld
> lt_cv_path_LDCXX=/usr/ccs/bin/ld
> lt_cv_path_NM='/usr/ccs/bin/nm -p'
> lt_cv_path_SED=/local/bin/sed
> lt_cv_prog_compiler_c_o=yes
> lt_cv_prog_compiler_c_o_CXX=yes
> lt_cv_prog_compiler_c_o_F77=yes
> lt_cv_prog_compiler_rtti_exceptions=no
> lt_cv_prog_gnu_ld=no
> lt_cv_prog_gnu_ldcxx=no
> lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BDRT][BDRT]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
> lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\'''
> lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\'''
> lt_cv_sys_max_cmd_len=262144
> lt_lt_cv_prog_compiler_c_o='"yes"'
> lt_lt_cv_prog_compiler_c_o_CXX='"yes"'
> lt_lt_cv_prog_compiler_c_o_F77='"yes"'
> lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([BDRT][BDRT]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'\''"'
> lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"'
> lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"'
>
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
>
> ACLOCAL='${SHELL} /bioportal/build/EMBOSS-4.0.0/missing --run aclocal-1.9'
> AJAX_FIXED_ROOT='\"/bioportal/build/EMBOSS-4.0.0/emboss\"'
> AMDEPBACKSLASH='\'
> AMDEP_FALSE='#'
> AMDEP_TRUE=''
> AMPNG_FALSE='#'
> AMPNG_TRUE=''
> AMTAR='${SHELL} /bioportal/build/EMBOSS-4.0.0/missing --run tar'
> AR='ar'
> AUTOCONF='${SHELL} /bioportal/build/EMBOSS-4.0.0/missing --run autoconf'
> AUTOHEADER='${SHELL} /bioportal/build/EMBOSS-4.0.0/missing --run autoheader'
> AUTOMAKE='${SHELL} /bioportal/build/EMBOSS-4.0.0/missing --run automake-1.9'
> AWK='gawk'
> CC='gcc'
> CCDEPMODE='depmode=gcc3'
> CFLAGS=' -O2 -D__EXTENSIONS__'
> CPP='gcc -E'
> CPPFLAGS='-DAJ_SolarisLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBENDIAN -I/local/include -DNO_AUTH'
> CXX='g++'
> CXXCPP='g++ -E'
> CXXDEPMODE='depmode=gcc3'
> CXXFLAGS='-g -O2 '
> CYGPATH_W='echo'
> DEFS='-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" -DVERSION=\"4.0.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_UNISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_DOPRNT=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 '
> DEPDIR='.deps'
> ECHO='echo'
> ECHO_C=''
> ECHO_N='-n'
> ECHO_T=''
> EGREP='grep -E'
> EMBOSS_TOP='/bioportal/build/EMBOSS-4.0.0'
> EXEEXT=''
> F77='g77'
> FFLAGS='-g -O2'
> HAVE_MEMMOVE=''
> HAVE_STRERROR=''
> INSTALL_DATA='${INSTALL} -m 644'
> INSTALL_PROGRAM='${INSTALL}'
> INSTALL_SCRIPT='${INSTALL}'
> INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
> ISAIXIA64=''
> ISAIXIA64_FALSE=''
> ISAIXIA64_TRUE='#'
> ISCYGWIN=''
> ISCYGWIN_FALSE=''
> ISCYGWIN_TRUE='#'
> ISSHARED_FALSE='#'
> ISSHARED_TRUE=''
> JAVA_OK=''
> LDFLAGS=' -L/local/lib -L/local/lib -liconv -R/local/lib -R/local/lib'
> LIBOBJS=''
> LIBS='-lm -lnsl -lsocket -lgd -lpng -lz -lm -liconv'
> LIBTOOL='$(SHELL) $(top_builddir)/libtool'
> LN_S='ln -s'
> LTLIBOBJS=''
> MAKEINFO='${SHELL} /bioportal/build/EMBOSS-4.0.0/missing --run makeinfo'
> NEEDAJAX=''
> NEEDAJAX_FALSE=''
> NEEDAJAX_TRUE='#'
> OBJEXT='o'
> PACKAGE='EMBOSS'
> PACKAGE_BUGREPORT=''
> PACKAGE_NAME=''
> PACKAGE_STRING=''
> PACKAGE_TARNAME=''
> PACKAGE_VERSION=''
> PATH_SEPARATOR=':'
> PCRE_DATE='21-May-2003'
> PCRE_LIB_VERSION='0:1:0'
> PCRE_MAJOR='4'
> PCRE_MINOR='3'
> PCRE_POSIXLIB_VERSION='0:0:0'
> PCRE_VERSION='4.3'
> POSIX_MALLOC_THRESHOLD='-DPOSIX_MALLOC_THRESHOLD=10'
> PURIFY_FALSE=''
> PURIFY_TRUE='#'
> RANLIB='ranlib'
> SET_MAKE=''
> SHELL='/bin/bash'
> STRIP='strip'
> VERSION='4.0.0'
> XLIB=' -L/usr/lib -R/usr/lib -lX11 -lsocket -lnsl'
> X_CFLAGS=''
> X_EXTRA_LIBS='-lsocket -lnsl'
> X_LIBS=' -L/usr/lib -R/usr/lib'
> X_PRE_LIBS=' -lSM -lICE'
> ac_ct_AR='ar'
> ac_ct_CC='gcc'
> ac_ct_CXX='g++'
> ac_ct_F77='g77'
> ac_ct_RANLIB='ranlib'
> ac_ct_STRIP='strip'
> am__fastdepCC_FALSE='#'
> am__fastdepCC_TRUE=''
> am__fastdepCXX_FALSE='#'
> am__fastdepCXX_TRUE=''
> am__include='include'
> am__leading_dot='.'
> am__quote=''
> am__tar='${AMTAR} chof - "$$tardir"'
> am__untar='${AMTAR} xf -'
> bindir='${exec_prefix}/bin'
> build='sparc-sun-solaris2.10'
> build_alias=''
> build_cpu='sparc'
> build_os='solaris2.10'
> build_vendor='sun'
> datadir='${prefix}/share'
> exec_prefix='${prefix}'
> havejavac=''
> host='sparc-sun-solaris2.10'
> host_alias=''
> host_cpu='sparc'
> host_os='solaris2.10'
> host_vendor='sun'
> includedir='${prefix}/include'
> infodir='${prefix}/info'
> install_sh='/bioportal/build/EMBOSS-4.0.0/install-sh'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localstatedir='${prefix}/var'
> mandir='${prefix}/man'
> mkdir_p='mkdir -p --'
> oldincludedir='/usr/include'
> prefix='/bioportal/sw/encap/emboss-4.0.0'
> program_transform_name='s,x,x,'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
>
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
>
> #define GETPGRP_VOID 1
> #define HAVE_DIRENT_H 1
> #define HAVE_DLFCN_H 1
> #define HAVE_DOPRNT 1
> #define HAVE_FORK 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_LIBM 1
> #define HAVE_MEMMOVE 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRFTIME 1
> #define HAVE_STRINGS_H 1
> #define HAVE_STRING_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_VFORK 1
> #define HAVE_VPRINTF 1
> #define HAVE_WORKING_FORK 1
> #define HAVE_WORKING_VFORK 1
> #define PACKAGE "EMBOSS"
> #define PACKAGE_BUGREPORT ""
> #define PACKAGE_NAME ""
> #define PACKAGE_STRING ""
> #define PACKAGE_TARNAME ""
> #define PACKAGE_VERSION ""
> #define PLD_png 1
> #define STDC_HEADERS 1
> #define STDC_HEADERS 1
> #define VERSION "4.0.0"
> #endif
> #ifdef __cplusplus
> extern "C" void std::exit (int) throw (); using std::exit;
>
> configure: exit 0
>
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