[EMBOSS] output of program "digest" as input for program "pepstats" ?
Ulrike Kaule
ulrike.kaule at gmx.de
Wed Aug 24 20:22:11 UTC 2005
Hello,
I'm a new user to emboss.
Within a Taverna-Workflow I want to digest a protein-sequence first with
the emboss-program "digest" and to use the output of "digest" - the
seqtable with the fragments - as an input for further sequence-analysis
programs. So the resulting fragments should be analysed by pepstats or
iep. But I have problems with the connection of these programs, because
the output of "digest" is not accepted by the other programs as input. I
thougth to solve this problem with using "seqret" between "digest" and
"pepstats", but this doesn't work.
Is there any solution to extract the protein-fragments produced by
"digest" and to use them as input for other programs?
Thank you in advance
Ulrike
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