[EMBOSS] embossrc - configure database NPRD and AEdb
Giovanni Marco Dall'Olio
dalloliogm at gmail.com
Wed Aug 24 19:21:08 UTC 2005
Hi all,
I'm trying to configure this two databases in my .embossrc - emboss_default
, but I didn't managed to get it works:
http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+3Xn_71Qks76+-lib+NUCLEOSOME
http://www.ebi.ac.uk/asd-srv/AEdb-query.cgi?method=MAIN&visit=first
For the first one, I've tried this:
DB NPRD [
method: srswww
format: embl
# url: "
http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-id+1YUkq1Qk6fN+-e+[NUCLEOSOME:'%s']
"
# url: "
http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+3Xn_71QkMvb+-lib+NUCLEOSOME
"
# url: "
http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-id+-e+[NUCLEOSOME:'%s']"
url: "http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz"
type: N
dbalias: NUCLEOSOME
app: getz
fields: "AC SQ"
]
But what's is wrong? How can I understand what is the 'correct' url to
choose, and how can I determine the right 'method' and 'format'?
I've seen that in the main page of this database, there are description
about the syntax and the and the structure in SRS. For example, can I use
the informations described here:
http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+icarusFile+-id+3Xn_71Qks76+-l+NUCLEOSOME+-ifile+i?
Thank you for any reply.
Giovanni
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