[EMBOSS] output of program "digest" as input for program "pepstats" ?
Guy Bottu
gbottu at ben.vub.ac.be
Thu Aug 25 12:18:43 UTC 2005
Dear Ulrike,
You can ask digest for a "Report Format" of type "List File", which you
can give as input to pepstats or iep (the peptides will be analyzed as
individual sequences and the results given the one aftert the other, they
are not merged).
I have no experience with Taverna and hence cannot tell you exactly how
to. I know that at the command line you would have to :
digest mysequence -rformat=listfile -outfile=myreport
iep list::myreport
Regards,
Guy Bottu,
Belgian EMBnet Node
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