Mutiple alignement of blast results
rls at ebi.ac.uk
Thu Mar 6 14:41:05 UTC 2003
Also, please take into consideration dbclustal which does what you need. You
can see it working oif you run a wu-blast at the EBI against swall. Once the
job is completed, click on Run dbclustal and choose which matches you wish
to align. The reference to dbclustal is:
"Rapid and reliable global multiple alignments of protein sequences detected
by database searches"
Thompson J.D., Plewnial F., Thierry J.-C. and Poch O.
Nucleic Acid Research, 2000, Vol.28, No 15 2919-2926
> -----Original Message-----
> From: owner-emboss at hgmp.mrc.ac.uk [mailto:owner-emboss at hgmp.mrc.ac.uk]On
> Behalf Of Catherine Letondal
> Sent: 06 March 2003 14:17
> To: Jean-Christophe AME
> Cc: emboss at hgmp.mrc.ac.uk
> Subject: Re: Mutiple alignement of blast results
> Jean-Christophe AME wrote:
> > Hi all,
> > I am looking for a program (preferably for unix or Mac) that does a=20
> > multiple alignment of a blast result. There used to be Mulblast=20
> > (http://www.cbs.cnrs.fr/Soft_ModMol/MulBlast/MulBlast-en.html) but it=20
> > doesn't seem to work anymore with the last blast outputs.
> > Does anybody have any idea on the subject. This could be a nice and=20
> > useful EMBOSS program.
> > Thanks for any help.
> > Jean-Christophe
> Hi Jean-Christophe,
> Just in case you don't have enough tools suggestion... :
> See, at: http://bioweb.pasteur.fr/seqanal/blast/intro-uk.html
> Blast post-processing:
> seqsblast (extraction of sequences from a Blast output)
> (alignment, then phylogenetic tools are then
> available on extracted
> Catherine Letondal -- Pasteur Institute Computing Center
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