Mutiple alignement of blast results

[Lisa Mullan]

You could try putting your BLAST results into http://abs.cit.nih.gov/blast/
which will covert them to fasta format, and then you can carry on with your
multiple sequence alignment.

Discussions abound as to who might write a BLAST wrapper or EMBOSS, but
nothing has happened so far, although there are offers!

HTH

Lisa  Mullan
  -----Original Message-----
  From: owner-emboss at hgmp.mrc.ac.uk [mailto:owner-emboss at hgmp.mrc.ac.uk]On
Behalf Of Jean-Christophe AME
  Sent: Wednesday, March 05, 2003 3:44 PM
  To: emboss at hgmp.mrc.ac.uk
  Subject: Mutiple alignement of blast results


  Hi all,
  I am looking for a program (preferably for unix or Mac) that does a
multiple alignment of a blast result. There used to be Mulblast
(http://www.cbs.cnrs.fr/Soft_ModMol/MulBlast/MulBlast-en.html) but it
doesn't seem to work anymore with the last blast outputs.

  Does anybody have any idea on the subject. This could be a nice and useful
EMBOSS program.
  Thanks for any help.
  Jean-Christophe



  ________________________
  Jean-Christophe Amé, PhD
  U.P.R. 9003 du CNRS - Cancérogénèse et Mutagénèse Moléculaire et
Structurale
  École Supérieure de Biotechnologie de Strasbourg
  Pôle API
  Boulevard Sébastien-Brant
  67400 Illkirch
  France

  tel.: 33 3 90 24 47 05
  Fax.: 33 3 90 24 46 86

  http://parplink.u-strasbg.fr
  http://www-esbs.u-strasbg.fr/centrerech/upr9003/upr9003.html
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.open-bio.org/pipermail/emboss/attachments/20030305/f1b47221/attachment-0001.html>