[EMBOSS] remap and GCG mapplot

Stefanie Lager stefanielager at fastmail.ca
Thu Dec 4 06:17:43 UTC 2003


I don't know anything about MacOSX, but when I had problems with TACG
on Linux Harry Mangalam sent me the latest TACG version 4.0, which
solved my compilation problems.

Stefanie

> It looks good, but I tried to compiled it with MacOSX 10.3 and I
> got a lot of errors...
> 
> Le 3 déc. 03, à 14:08, Stefanie Lager a écrit :
> 
>> The program TACG ( http://tacg.sourceforge.net/) can substitute
>> for some of the GCG applications missing in EMBOSS. Like
>> 
>> mapplot (tacg -l -s )
>> map (tacg -T3,1 -sL )
>> mapsort (tacg -cF2 )
>> mapgel (tacg -g10 -s )
>> findpatterns (tacg -S2 -R 'path/to/a/pattern/file )
>> 
>> Stefanie
>> 
>>> Hello,
>>> 
>>> I am writing for a request for emboss. It would be great that
>>> emboss could integrate something similar to the very useful (my
>>> point of view) GCG's program MAPPLOT (a graphical representation
>>> of a restriction map). I am sure that could be easily added to
>>> emboss's remap or restrict.
>>> With this feature added I would definitively not use anymore
>>> GCG. Any idea. Thanks for the great job.
>>> Jean-Christophe
>>> 
>>> ________________________
>>> Jean-Christophe Amé, PhD
>>> U.P.R. 9003 du CNRS - Cancérogénèse et Mutagénèse Moléculaire et
>>> Structurale
>>> École Supérieure de Biotechnologie de Strasbourg
>>> Pôle API
>>> Parc d'innovation, Boulevard Sébastien Brant
>>> BP 10413
>>> 67412 ILLKIRCH CEDEX
>>> France
>>> 
>>> tel.: 33 3 90 24 47 05
>>> Fax.: 33 3 90 24 46 86
>> 
>> _________________________________________________________________
>> http://fastmail.ca/ - Fast Secure Web Email for Canadians
> ________________________
> Jean-Christophe Amé, PhD
> U.P.R. 9003 du CNRS - Cancérogénèse et Mutagénèse Moléculaire et
> Structurale
> École Supérieure de Biotechnologie de Strasbourg
> Pôle API
> Parc d'innovation, Boulevard Sébastien Brant
> BP 10413
> 67412 ILLKIRCH CEDEX
> France
> 
> tel.: 33 3 90 24 47 05
> Fax.: 33 3 90 24 46 86

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    http://fastmail.ca/ - Fast Secure Web Email for Canadians


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