prosite

[David.Bauer at SCHERING.DE]

Hi,

I compared outputs from ps_scan.pl with that from patmatmotifs. This shows that
the emboss prosite applications (prosextract, patmatmotifs) make only use of the
PATTERN entries in prosite.
There are also MATRIX entries, which are silently ignored, i.e. they are not
included in prosite.lines.
OK, a matrix is not a line, I know :-)
Are there any plans to extend patmatmotifs with another algorithm which would
make use of the matrix entries ?

Ciao,
David.