How do I specific human genome CHR_01 database at .embossrc file
Zheng Jin Tu
ztu at msi.umn.edu
Wed Jun 12 21:08:26 UTC 2002
I have downloaded human genome CHR_01 data from
ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/CHR_01 directory with
hs_chr1.asn.gz, hs_chr1.fa.gz, hs_chr1.gbk.gz, hs_chr1.gbs.gz,
hs_chr1.mfa.gz files.
After gunzip them, I use hs_chr1.gbk to run dbiflat, it works fine and
creates these files: division.lkp entrynam.idx acnum.trg acnum.hit.
Question is come down how do I specify this database at .embossrc
for these fields especially for method:
method: ???
format: genbank ?
Any suggestion is great appreciated.
Thanks,
Tu
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Zheng Jin Tu
Supercomputing Institute
University of Minnesota
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