emowse!
Uma Maheswari
uma at avesthagen.com
Fri Aug 16 06:37:45 UTC 2002
hai!
Iam using emowse program in EMBOSS to search a protein database for matches
with the mass spectrometry data.
When this database is just a few protein(100 seq) in fasta format it works
fine. but when I do the same over nr database I get an error message
"An error has been found: Sequence is not a protein"
I downloaded the nr database in fasta format.(all the seq. in a single
file) then used csplit to split it into indiuvidual file with the common
prefix and ran the prog. as follows.
Input sequence(s): pro*
Input file: b8
Whole sequence molwt [0]:
Output file [baa92411.emowse]:
An error has been found: Sequence is not a protein
(note:'pro' is the common prefix for all the protein database sequence)
What can I do to avoid this error? Is there any other way to create he
database for the same.
Thanks in Adv.
Uma Maheswari
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