Discouraging jemboss perfornance

[Richard Cote]

Hello all.

We have installed emboss/jemboss locally. Jemboss is running on a linux 
box, with a standard installation (apache/tomcat/soap). We have noticed 
a *huge* performance gap between running some applications (eg 
supermatcher, megamerger) through a shell command-line vs. using jemboss 
(jemboss being significantly slower). How could this situation be improved?

Thank you for any help you can provide,
R. Cote
-- 
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Richard Cote, M.Sc.                     richard at seqbio.com
Senior Bioinformatician              http://www.seqbio.com
Sequence Bioinformatics                     1-877-SEQUENCE
1410 Stanley St. Suite 704              (tel) 514-842-5356
Montreal, QC  H3A 1P8                   (fax) 514-842-7230
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