wEMBOSS
Sarachu Martin
mad at biol.unlp.edu.ar
Mon Apr 9 13:38:50 UTC 2001
Hi David,
Thanks for your comments. Now for the specifics
Mensaje citado por: David Bauer <bauer at genprofile.com>:
> Hi,
>
> I'm just testing your web interface. I like it. It's
easy to install and
> a good solution for use in an intranet.
> Here are some comments:
> 1)
> Under 'Installation' you should mention that the
script requires the
> CGI.pm module and maybe put a link where to download
it (CPAN or CSH).
Yes, I should mention that. Will correct
> 2)
> Within the script it is not clear that the 'writeDIR'
is an absolute
> path and the 'graphicsDir' is relative to the httpd
document root
> because on top there is written that all names are
full pathnames.
I have to make clearer comments...
> 3)
> I had to add
> $ENV{"PATH"}="/bin:/usr/bin:/usr/local/bin";
> to the script. Otherwise it did not find the EMBOSS
executables.
I assumed that EMBOSS programs path will be in the PATH
variable of the web server. What do you think about
this?
> 4)
> Graphical output has a problem. It works nice with
png. But if I select
> postscript, then the name of the graphical file is
also written as 'IMG
> src' which then does not work. What about changing
this to present as
> result a page with a link to the graphical file. If
it can be rendered
> by the browser, it will showup within the browser.
Postscript and other
> formats can be either processed by helper
applications or saved for
> local use.
Hmmm... I didn't thought of that. My first approach was
to put all images into the <IMG> tag so all the
information would be "into" the page. You gave
something to think about.
Martin.
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