Installing PISE - words for the wary..

[Catherine Letondal]

David Martin writes:
> 
> A few extra notes for installing PISE in addition to those that come
> with the package..

David: why don't you use the pise-users at pasteur.fr mailing list for
discussions about Pise? (or the pise at pasteur.fr address)

> 
> If you have a new version of rxp you need to remove the -e flag in
> Makefile.in.
> 
> If you have Perl with a funny name or in a funny place you should set PERL
> to the path to the Perl executable, and if the name is not 'perl' (ie
> 'perl5' or similar) then you will have to change all 'perl' to the correct
> name in Makefile.in.

The perl5 problem is now fixed: I have updated the aclocal.m4 configuration file.

Now, if perl or perl5 is not in your current PATH, you can call configure this way:
PERL=/path/to/perl ./configure --prefix=/path/to/Pise

(thanks to Nicolas Joly for helping!)

The rxp problem is more tricky. I think we will solve it by upgrading our
local version!

BTW, the last distribution contains a small fix for sequence format conversion
and a new XML file for program rnaga (ftp://ftp.ncifcrf.gov/pub/users/chen/, Prediction 
of common secondary structures of RNAs by genetic algorithm).

> 
> Then you can configure and make.
> 
> regards
> 
> ..d
> 
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--
Catherine Letondal -- Pasteur Institute Computing Center